Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2520g00005 ATGCTTTGTTTGTCCGTACGGTTCTACGTCAACGACGCCTTGCTCTTCCTTCTCCCTCCCTCTCTCATTCATGGCTTCGCAAGGGAAGTTCTAACCCTGAGAGGTTTTAGATTCGCTTTCTTGTTCCTTTATGGTTTCTATGCTAAGAATGTGACGTTTAGTACTATCGACGTTCTTGATCATAGAATCCTAGTTCTGATTCTCGGTGGAAATGCTCACTTTTCCCATCCATTTGAATCTATGCAAGGCTTTGTCTTTGGAGTGGGTGTGGCAGCTGCATTATTGTGCTGCTTCTGGTGCCAAAATAAGCATACGCAGGCAGGGAGAAGCTCTGAGAAATTAGGAAACATTCCCTTTCGTATCAAAGTAGTGGATCCTGGGGCATCAGTGTCAAGCTCAAATGTGGGGCAGGAGTCACCCGTATCATCTGACTGGAGTAACATGCCTCTTTGGTTGGAAGGACTTAAGAGGAAGGATGTTGGTTCTGCATGCGGAATTCCAAAGTATTCTTACAAAGATATGCAGAGGGCAACTTCTAATTTCACAACCATCATAGGTCGTGGTGCATTTGGTTCAGTTTACAAAGCTCAGATGCTCGCTGGTGAAACAGTTGCTGTTAAAGTTCTTGGTAACAATTCAAGACATGGAGAGAAGGAGTTTTTGACCGAGGTCTTGTTACTTGGAAGATTACACCACAAACGTCTTGTGGATTTGGTGGGATATACTGCCGAGAGAGGACATCATATGCTCCTTTTTGCGTACATGAGTAATGGCAACCTCGCCTCTCACTTATATGGCAAAAATCAGGAGCCATTAAACTGGGATGCAAGATTTCAGATAGCACTGGATGTTGCGAGGGGACTAGAATATCTACATTATGGGGCTTCTTCCCCTGTTGTGCACCGTGACATTAAATCTTCCAACATATTGCTGGACCAGTTTATGAGAGCGAAGGTAACTGACTTTGGGCTTTCTAGACCAGAGATGATTAAACGTCGTTCATCTAATATCAAAGGAACTTTTGGCTATCTTGATCCTGAATACATGTCTACAAAAACCTTTACAAAGAAGAGTGATGTTTATAGTTTTGGTGTGCTACTCTTTGAATTGATTACTGGCAGGAATCCACAGCAAGGCCTGATGGAATATGTGAAACTAGCAGCCATGGAAGCCGAGAGTAAGGTTGGGTGGGAAGAAATTGTGGATTCACAGCTTAATGGAAAATATGATGTGCATACGCTTAATGATATGGCTGCTCTTGCTTTGAAATGTGTCAATGAAGCATCCAGAGATCGGCCTTCCATGAGGGACATTGTTGGATCATTATCCCAGCTCTGTAAGAAGAAGCATTGTGGAAATTGTAATATGAAGTCTCCTGCAGTGAATGAAGTTTCCATTGAAATGGATGAAGTTTTCATCCACAGAGCACTCAAATGTGATGCGCAAATTGCATAG 1455 0.4296 MLCLSVRFYVNDALLFLLPPSLIHGFAREVLTLRGFRFAFLFLYGFYAKNVTFSTIDVLDHRILVLILGGNAHFSHPFESMQGFVFGVGVAAALLCCFWCQNKHTQAGRSSEKLGNIPFRIKVVDPGASVSSSNVGQESPVSSDWSNMPLWLEGLKRKDVGSACGIPKYSYKDMQRATSNFTTIIGRGAFGSVYKAQMLAGETVAVKVLGNNSRHGEKEFLTEVLLLGRLHHKRLVDLVGYTAERGHHMLLFAYMSNGNLASHLYGKNQEPLNWDARFQIALDVARGLEYLHYGASSPVVHRDIKSSNILLDQFMRAKVTDFGLSRPEMIKRRSSNIKGTFGYLDPEYMSTKTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMEAESKVGWEEIVDSQLNGKYDVHTLNDMAALALKCVNEASRDRPSMRDIVGSLSQLCKKKHCGNCNMKSPAVNEVSIEMDEVFIHRALKCDAQIA 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2520g00005 484 SMART serkin_6 179 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2520g00005 484 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524
Pral2520g00005 484 SUPERFAMILY Protein kinase-like (PK-like) 165 442 IPR011009 -
Pral2520g00005 484 Pfam Protein tyrosine and serine/threonine kinase 181 441 IPR001245 GO:0004672|GO:0006468
Pral2520g00005 484 PANTHER OS01G0750732 PROTEIN 83 455 - -
Pral2520g00005 484 Gene3D Phosphorylase Kinase; domain 1 163 254 - -
Pral2520g00005 484 ProSiteProfiles Protein kinase domain profile. 179 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2520g00005 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Pral2520g00005 484 FunFam calcium/calmodulin-regulated receptor-like kinase 1 255 463 - -
Pral2520g00005 484 Gene3D Transferase(Phosphotransferase) domain 1 255 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2520g00005 Pral-Chr2520 31062 36231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2520g00005 161 452 Receptor kinase-like Gene Family AT3G19300 40.067 9.90e-71 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Pral2520g00005 PK_Tyr_Ser-Thr 3.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2520g00005 - - gmx:100816549 535.028