Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2517g00005 GTAACTGATTCAAATTCAAATGCTAACCTGCCTCCATGTCCTTTAAGCCAGCAACCTTCTTGTTCCTTGGATGGCCCTGTTGCTATACTTTGGGATATTGAAAATTGTCCAGTTCCGAGTGGTGTGCGCCCTGAAGATGTTGCCGGGAATGTAACAATGACTTTGCGAGTGCATCCAATAATTAAAGGAGCTGTTGTGATGTTTTCTGCTTATGGGGATTTTAATAATTTCCCCAGGCGACTCAGAGAGGGTTGCCAAAGAACTGGTGTTAAACTCACTGATGTTCCCAGTGGGAGAAAAAATGCTGCTGACAAAGCTATCTTGATCGACATGTTCTTGTTTGCCCTTGACAACCGACCACCATCTTCTATAATGCTGATATCTGGAGATGTTGATTTTGCTCCTGCACTTCATGTTCTTGGCCACCGGGGATATACTATCATTCTTGTCATCCCTGCTGGGGTGGGTGTGCCAACTGCCCTTAGCCGTGCAGGTAAATTTGTCTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGTTTTGTGCCTCCCTCAAAGGCTCTAGTGCCACCTCATGTCGTTCCAACTGAGGTTGTTCCAGATCTGATTGGGTGCCGTATCAGTGGCAACTTTGATGGGAAAAATGAAGAAGAAGCTATTGTTTATGGAGGGATCTCCCAGAACTACCATAACTCCAAATGTTGTTCATTTGTCTCAGACAAAAGTGATACATTGAATGCATCATGCTTTCCAACGGCTTTGAGGTCACATAGCCTTCCATCCACTCTGAACAATGTTTCAGGAGGTTCTATGTCTTCTTCTAGCAACCGAAATGAATGCCCATTGTGGGTAGAACCTGGGGATTTGAATGGTGTGAAGTGTCAGCTGGTAAAGTTGCTTGAACTCTCTGGAGGTTGTTTGCTTCTGGCTCAAGTTGCACCAGAGTATCAGAAATATTTTGGGAGGTCTCTCTCTGTGTCTAAATATGGGGTACGCAAGTTAGTGAATCTTTTCAAGAAAATGGGTGATCCATTTTCTGTGGAAGGGAAAGGGCCTCGGATGTTTGTACGTCTTCAAAACTGGACTGTGTGCCCTCTGTCTCAGGTGAGCAATGACAAGAAAGGAAAAGGGATTCAAGAAGAGAATGCAGATGTTATCCATGCTGGTTGCTCAGTAGATGAAGAAAGAATAGTCACAGAAGAACATGTTGAGAGAAGCAGCATAGAAAAGGTTCACCAGGGGAAAGCAGCCAGAAGCGAAATTCATGACCGAATTCTGGAACAATTCAAGCATGAGCTGCAAGAGATTCTCGTGATTTATTCTTGTCCAATATTCATAGATTGTTTTGATGACATTTACCAGCTACGATACAAGAAGCCACTGGAATACCAGAGACTGGGCGTGGACAAATTGGATGAATTGTTTGAGAAAGTAAGTGATGCTGTAGTATTGCATGAAGAACCAGTAAGCAAGAGGAAGTTCCTGGCTGCCGTGGATGGTTAA 1500 0.4427 VTDSNSNANLPPCPLSQQPSCSLDGPVAILWDIENCPVPSGVRPEDVAGNVTMTLRVHPIIKGAVVMFSAYGDFNNFPRRLREGCQRTGVKLTDVPSGRKNAADKAILIDMFLFALDNRPPSSIMLISGDVDFAPALHVLGHRGYTIILVIPAGVGVPTALSRAGKFVWDWPSIARGEGFVPPSKALVPPHVVPTEVVPDLIGCRISGNFDGKNEEEAIVYGGISQNYHNSKCCSFVSDKSDTLNASCFPTALRSHSLPSTLNNVSGGSMSSSSNRNECPLWVEPGDLNGVKCQLVKLLELSGGCLLLAQVAPEYQKYFGRSLSVSKYGVRKLVNLFKKMGDPFSVEGKGPRMFVRLQNWTVCPLSQVSNDKKGKGIQEENADVIHAGCSVDEERIVTEEHVERSSIEKVHQGKAARSEIHDRILEQFKHELQEILVIYSCPIFIDCFDDIYQLRYKKPLEYQRLGVDKLDELFEKVSDAVVLHEEPVSKRKFLAAVDG 499
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral2517g00005 499 Gene3D - 25 171 - -
Pral2517g00005 499 CDD PIN_limkain_b1_N_like 26 152 - -
Pral2517g00005 499 PANTHER LIMKAIN B LKAP 8 374 IPR024768 GO:0005777|GO:0010468
Pral2517g00005 499 ProSiteProfiles OST-type HTH domain profile. 287 359 IPR025605 -
Pral2517g00005 499 Pfam NYN domain 26 164 IPR021139 GO:0004540
Pral2517g00005 499 CDD LOTUS 425 487 - -
Pral2517g00005 499 Gene3D - 419 491 IPR041966 -
Pral2517g00005 499 Gene3D - 288 355 IPR041966 -
Pral2517g00005 499 Pfam OST-HTH/LOTUS domain 425 487 IPR025605 -
Pral2517g00005 499 Pfam OST-HTH/LOTUS domain 289 351 IPR025605 -
Pral2517g00005 499 CDD LOTUS 288 357 - -
Pral2517g00005 499 ProSiteProfiles OST-type HTH domain profile. 424 498 IPR025605 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral2517g00005 Pral-Chr2517 33675 35491 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2517g00005 23 177 C2H2 Transcription Factor Family AT5G61190 41.935 1.55e-29 121