Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2498g00004 ATGCCAGATTACTTATACTCCATTTTCTTCTTCTTCTGTTTCTTTTTTATTGTTCTCAGTGATGCTAAGACTAATAAGTCTCACCTCTATGATCAAGAACACGCAGTCCTACTGAACATAAAAGAACACCTTCATCCATTCCTCCATCAGTGGGCCCCATCGGATTCCTCTCATTGTTCTTGGCTTGGCATCAACTGCACCGATGATTCTGTCACCAAATTAGATTTTGGTGACTTGAACATTACCAAAACGATACCTCCTTTCCTCTGTGACCTTAGAAATCTCACCTTTATTGATTTTCAACTTAATTATTTCACTGGGGAGTTCCCAAAATTTCTCTACAATTGCTCCAAGCTTGAGTACCTTGACCTCTCCCAGAACAACTTTTCGGGTCCAATTCCAAATGACATTGACCGATTGGCCAACTTGCGTTTCCTTAATCTTGGTGCCAACGAATTCTCCGGTGACATTCCGACCAGTATCGGAAGGTTGAAGGAGTTGAGAAGTCTTCAACTTCACTGGTGTGAATTTAACGGTAGTATCCCTGATGAAATAGGCAACTTGTCCAATCTTGAATTGTTACGCTTGGAGGAAAATGAGAATTTGATTGGGAAAATTCCAGAAAGTATTGGAGAACTGGTTAGTTTGGTGGAATTGGATTTATCGCAGAATGGTTTAAGTGGGCAAATCCCCAGTGGTTTGTTTGCTTTGAAGAATCTCAGCATATTGTATCTTTGGAAAAACAGGCTATCTGGGGAAATACCTGCAAAAATTGAAGCTTTGAATCTGACTATACTCGATGTTTCACGCAATATTCTTACTGGAAAAATCCCAGCTAGTTTAGGGAAGCTTAAAAAGCTGACAGGCTTGAGTTTGGATATGAATCAACTATCAGGAGAGATACCCGAAAGCCTTGCTCATCTGCCAGCTCTCATAGATTTCATGGTTTTCCAAAACCACCTATCAGGCACTCTTCCTCCTTATTTTGGTCGTTATGCGCCACTCAAAACCTTCCAGGTTGCAACCAATCGATTGACAGGAAAATTGCCAGAGGATTTATGTTACAAGGGCATGTTAGTTGGTGTAAGTGCTTATGACAACAATCTAAGCGGGGAGCTGTCGGAATCACTAGGGAGCTGCACTAGCCTGCAACACTTGTTTCTTGACAATAATGGTTTTTCAGGTGAAATCCCTGGCGGCCTTTGGACATCACAGAATTTGTTGACTCTAGTAGTCAGCAACAACAAGCTCACCGGCGAGCTACCTCAAAGATTGGCTTGGAATCTTTCAAGGTTGTCCATCAGCAACAATCAATTCTCTGGTAGAATTCCAGCAGGAGTATCTACCTGGAAGAATCTGATCGAGTTTAAAGCTAGTAAGAATTTCTTCAACGGAAGTATTCCACAAGAGCTTACGACTCTTCCTAAGCTAACGACATTATTGCTTGATCAAAACCAGCTAACAGGGCCACTTCCATCAGAAATCATATCTTGGAAATCTCTCAATGCTCTAAATTTGAGTCACAATCAACTCTCTGGACAAATCCCATATTCTTTTGATGGTTTAACTGTCCTGGAACAACTAGATTTGTCAAATAATCAGCTCTCCGGTCATGTTCCACCTCAACTTGGTAAATTGTCAATGACCTTTACAAACTTCAATCTATCCTCAAATTTTTTCACAGGAAAGATTCCTAGAGAATTTGAAAACCTTGTCTATTCTGACAGCTTTCTAAACAATTCTGGTCTCTGTGCTAATACCAAAAGGCTAAACCTTCCCTTATGCAATTTCGGTTCTGACCTTCAAGGATCAAGCAACAGATCATCTGTGTCTCCTGCTTTGACCATAGGCCTAGTGATAGTGGCCTCTTTAGCAACCTTCTTGAGTTTACTCTTAATTATTAGAGTATACAAATCAAGAAAGCAGGCACTGGATACTTCATGGAAGTTGACTTCCTTTCACAGGTTTAGTTTCAGTGGAATGAACATCGTATCATCACTGACAGATGACAATATTATAGGCAGAGGTGGGTTTGGCACAGTATATCAAGTCCCTATAGATGGTTTAGGCTATGTTGCTGTGAAGAGGATAATGGACAATAAGAAGTGGGAGCAGAAACTTGAGGATGCATTCCTAGCAGAAGTTAAGATTTTGAGCAACATTTGTCACAACAATATTGTGAAGCTGTTGTGTTGTATTTCAAGCGAGGATTCTTTGATGCTTGTGTATGAATACCTAGAAAACAATAGCCTTGACCGCTGGTTGAGCAAAAAGAATAGGTTAAACCATAATGTTGTTCTTGATTGGCCAAAAAGATTGCAGATAGCCATAGGAGCTGCCCAAGGTCTGACCTATATGCACAATGATTGCTCCCCTCCGATCATTCATCGTGATATTAAAACAAGTAACATCCTTTTGGATTCGGAATTCAATGCAAAAGTTGCAGACTTTGGTCTAGCAAGAATGTTGATCAAGCCAAGCCAACTCATCACCATGTCAGGTGTAGCTGGATCATATGGCTATATTGCTCCAGAATATATTCAAACAAGCAAAATCAATGAAATGATCGATGTGTATAGCTTTGGGGTGGTGTTGCTGGAACTAACAACTGGAAAAGAAGCAAATTACGGAGATGAACACTCATCTCTTGCAGACTGGGCATGTCGCCATGTGCAGTTGGGTGGAGATGTGGAAGAAGTTCTAGATGACGAAATTATGGAAGCATGCTATATGGATGAAATATGCCACGTGTTCAAGCTTGGGGTTATGTGTACTGCAATACTACCAGCCCATAGGCCTTCCATGAAGGAGGTTCTGCAAATACTGCTTCGTTGCAGGGACCCATTTGGTTATGGAGAAAGGAGTCCTGGAATCTTTGATGTTGTCCCTCTGCTAAAGAATTCCAAGAGGGAGAGTAGATTGGATATTGATGATGATTTATAG 2943 0.4088 MPDYLYSIFFFFCFFFIVLSDAKTNKSHLYDQEHAVLLNIKEHLHPFLHQWAPSDSSHCSWLGINCTDDSVTKLDFGDLNITKTIPPFLCDLRNLTFIDFQLNYFTGEFPKFLYNCSKLEYLDLSQNNFSGPIPNDIDRLANLRFLNLGANEFSGDIPTSIGRLKELRSLQLHWCEFNGSIPDEIGNLSNLELLRLEENENLIGKIPESIGELVSLVELDLSQNGLSGQIPSGLFALKNLSILYLWKNRLSGEIPAKIEALNLTILDVSRNILTGKIPASLGKLKKLTGLSLDMNQLSGEIPESLAHLPALIDFMVFQNHLSGTLPPYFGRYAPLKTFQVATNRLTGKLPEDLCYKGMLVGVSAYDNNLSGELSESLGSCTSLQHLFLDNNGFSGEIPGGLWTSQNLLTLVVSNNKLTGELPQRLAWNLSRLSISNNQFSGRIPAGVSTWKNLIEFKASKNFFNGSIPQELTTLPKLTTLLLDQNQLTGPLPSEIISWKSLNALNLSHNQLSGQIPYSFDGLTVLEQLDLSNNQLSGHVPPQLGKLSMTFTNFNLSSNFFTGKIPREFENLVYSDSFLNNSGLCANTKRLNLPLCNFGSDLQGSSNRSSVSPALTIGLVIVASLATFLSLLLIIRVYKSRKQALDTSWKLTSFHRFSFSGMNIVSSLTDDNIIGRGGFGTVYQVPIDGLGYVAVKRIMDNKKWEQKLEDAFLAEVKILSNICHNNIVKLLCCISSEDSLMLVYEYLENNSLDRWLSKKNRLNHNVVLDWPKRLQIAIGAAQGLTYMHNDCSPPIIHRDIKTSNILLDSEFNAKVADFGLARMLIKPSQLITMSGVAGSYGYIAPEYIQTSKINEMIDVYSFGVVLLELTTGKEANYGDEHSSLADWACRHVQLGGDVEEVLDDEIMEACYMDEICHVFKLGVMCTAILPAHRPSMKEVLQILLRCRDPFGYGERSPGIFDVVPLLKNSKRESRLDIDDDL 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2498g00004 980 FunFam Receptor-like protein kinase HSL1 isoform A 30 179 - -
Pral2498g00004 980 SUPERFAMILY RNI-like 266 598 - -
Pral2498g00004 980 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515
Pral2498g00004 980 ProSiteProfiles Protein kinase domain profile. 667 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2498g00004 980 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Pral2498g00004 980 SUPERFAMILY Protein kinase-like (PK-like) 657 943 IPR011009 -
Pral2498g00004 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Pral2498g00004 980 Gene3D Transferase(Phosphotransferase) domain 1 746 949 - -
Pral2498g00004 980 SMART serkin_6 667 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2498g00004 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 237 942 - -
Pral2498g00004 980 FunFam Leucine-rich repeat receptor-like protein kinase TDR 281 597 - -
Pral2498g00004 980 Pfam Leucine rich repeat N-terminal domain 32 66 IPR013210 -
Pral2498g00004 980 Pfam Protein kinase domain 669 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2498g00004 980 SMART LRR_typ_2 474 498 IPR003591 -
Pral2498g00004 980 SMART LRR_typ_2 522 546 IPR003591 -
Pral2498g00004 980 SMART LRR_typ_2 140 164 IPR003591 -
Pral2498g00004 980 SMART LRR_typ_2 284 308 IPR003591 -
Pral2498g00004 980 SMART LRR_typ_2 213 237 IPR003591 -
Pral2498g00004 980 SMART LRR_typ_2 380 404 IPR003591 -
Pral2498g00004 980 Gene3D Ribonuclease Inhibitor 319 593 IPR032675 -
Pral2498g00004 980 FunFam Kinase family with leucine-rich repeat domain-containing protein 746 955 - -
Pral2498g00004 980 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 198 277 - -
Pral2498g00004 980 SUPERFAMILY L domain-like 46 371 - -
Pral2498g00004 980 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Pral2498g00004 980 Pfam Leucine rich repeat 498 535 IPR001611 GO:0005515
Pral2498g00004 980 Pfam Leucine rich repeat 94 152 IPR001611 GO:0005515
Pral2498g00004 980 Gene3D Ribonuclease Inhibitor 142 199 IPR032675 -
Pral2498g00004 980 Gene3D Phosphorylase Kinase; domain 1 638 745 - -
Pral2498g00004 980 PRINTS Leucine-rich repeat signature 501 514 - -
Pral2498g00004 980 PRINTS Leucine-rich repeat signature 522 535 - -
Pral2498g00004 980 Gene3D Ribonuclease Inhibitor 200 318 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2498g00004 Pral-Chr2498 80065 83577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2498g00004 33 942 Receptor kinase-like Gene Family AT5G25930 51.746 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral2498g00004 Pkinase 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2498g00004 - - qsa:O6P43_007862 1184.09