Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2496g00008 ATGTTCAAGAAGGATTGCACCGATCTGGTTCGTCGGATCTCTTTACTTACTTATTTGTTCGAGGAGATTAGGGACTCGAAGAAGGCCGTTGTTGATTCTGGAAACTCGGATGCTTCTACTTCGTCCACTGGCTCTGCATCTTCCTGGTCCTCTGATCTGGTGCTCGCTCTCCACTCAGCCAAGCGCCTTATTTCTGTCGCTAGGAACTTCCGTTCTAATTCATCTTCTGATGGAGCTGCCAAGGCCATTGTATTCCAATTTCAATGTGTGACATGGAAATTGGAAAAGCTGTTAAGCGTCCTACCCTATGACGATCTAGACATATCAGAGGAAGTCAGGGAACAGGTGGAGTTGGTCAGAACACAACTGAGACGAGCCACTGAAAAATATGAATATATGATTTCCGAGCAGTCATCTTATGACTCATCTCAGCCAATGGCTCTGGAAATTAGTCAAAGTTTCCGTAGATCTGTGAATGGATTGCACAAACAGCATAGCTGTCCTGGTTCTTTATCAGATCTAGAAAGCATTCCTAGAAGCAGTGGATGGAACAGTGGTAGCACAAATCAGACAAGCCCTCGCTTGGAAAGAGCACAGAGCATCCCTGCATCGTCTGAGGTTTCAATATCTAATCTTGTTGATCCTGAAGGTCAAGAAAATTCTGTGAAAAAGACTCTTACTGAAGTGAAAAAGCCTGAGGCAATTCGTATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACAGGTCAGACATATGAGAGATCTTACATCCAGAGATGGATAGATGGGGGAAATACAACTTGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACACTTACACCAAACTATGTGTTAAGGAGCCTTATAACTCAATGGTGTATGGAGCATAATATTGAGCAGCCAACAGGACTTACAAATGGGAAGATAAAAAAGAGTGATGGATCATTCAGAGATGTTACGGGTGACATGGCAGCCATCGGAACTCTTGTCCAGAAGCTTTCTAGCCAGAACATTGAAGAGCGTAGAGCAGCTGTTGCTGAAATTCGATCACTTTCCAAACGAAGCACAGATAACAGAATACTAATTGCTGAAGCAGGAGCAATCCCAATTCTTGTTAACCTTTTGACATCAGAAGATGTGTTGACTCAAGAAAATGCCGTTACTTCCATTCTCAACCTCTCTATCTACGAGAACAACAAAGGACTCATAATGCTTGCTGGTGCCATCCCGTCCATTGTCCAAATCCTAAGAGCTGGAAGCATGGAAGCAAGAGAAAACGCAGCAGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAAATAATTATCGGTGCCTCTGGAGCTATCCTTGCTTTGGTAGAATTGCTCCAAAATGGGAGTCCTAGAGGGAAGAAGGACGCCGCAACAGCATTATTCAACTTATGCATATATCAAGGAAACAAGGGTAGGGCCATAAGAGCAGGGATCATTGCAGCATTGTTGAAGATGCTTACAGACTCAAGCAAGTCGATGGTCGATGAAGCGTTGACAATAATGTCGGTTCTTGCCAGCTACCAAGAAGCAAAGGTTGCCATTGTAAAGGCCAGCACTATACCTGTTCTTATTGATCTATTGAGGACTGGATTGCCTCGAAACAAAGAAAATGCAGCTTCCATTTTACTTGCCTTGTGTAAGAGGGATCCTGAAAATCTGGCTTGTATAAGCAGGCTTGGTGCTATCATACCTTTGACGGAACTTGCTCGGAATGGCACGGAGAGGGCTAAAAGGAAGGCTACTTCACTATTAGAGCATCTACGAAAGTTGCAACATATTTGA 1851 0.4365 MFKKDCTDLVRRISLLTYLFEEIRDSKKAVVDSGNSDASTSSTGSASSWSSDLVLALHSAKRLISVARNFRSNSSSDGAAKAIVFQFQCVTWKLEKLLSVLPYDDLDISEEVREQVELVRTQLRRATEKYEYMISEQSSYDSSQPMALEISQSFRRSVNGLHKQHSCPGSLSDLESIPRSSGWNSGSTNQTSPRLERAQSIPASSEVSISNLVDPEGQENSVKKTLTEVKKPEAIRIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQHLTLTPNYVLRSLITQWCMEHNIEQPTGLTNGKIKKSDGSFRDVTGDMAAIGTLVQKLSSQNIEERRAAVAEIRSLSKRSTDNRILIAEAGAIPILVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGAILALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIIAALLKMLTDSSKSMVDEALTIMSVLASYQEAKVAIVKASTIPVLIDLLRTGLPRNKENAASILLALCKRDPENLACISRLGAIIPLTELARNGTERAKRKATSLLEHLRKLQHI 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2496g00008 616 Coils Coil 109 129 - -
Pral2496g00008 616 Gene3D - 413 515 IPR011989 -
Pral2496g00008 616 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Pral2496g00008 616 Gene3D - 319 412 IPR011989 -
Pral2496g00008 616 FunFam RING-type E3 ubiquitin transferase 320 413 - -
Pral2496g00008 616 MobiDBLite consensus disorder prediction 165 220 - -
Pral2496g00008 616 FunFam RING-type E3 ubiquitin transferase 414 514 - -
Pral2496g00008 616 Pfam U-box domain 237 308 IPR003613 GO:0004842|GO:0016567
Pral2496g00008 616 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Pral2496g00008 616 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 419 IPR000225 GO:0005515
Pral2496g00008 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 316 IPR013083 -
Pral2496g00008 616 Gene3D - 516 615 IPR011989 -
Pral2496g00008 616 Pfam Armadillo/beta-catenin-like repeat 449 487 IPR000225 GO:0005515
Pral2496g00008 616 Pfam Armadillo/beta-catenin-like repeat 367 405 IPR000225 GO:0005515
Pral2496g00008 616 SUPERFAMILY RING/U-box 235 311 - -
Pral2496g00008 616 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515
Pral2496g00008 616 FunFam RING-type E3 ubiquitin transferase 516 615 - -
Pral2496g00008 616 CDD RING-Ubox_PUB 238 290 IPR045210 -
Pral2496g00008 616 PANTHER U BOX DOMAIN-CONTAINING 3 611 - -
Pral2496g00008 616 SMART arm_5 407 447 IPR000225 GO:0005515
Pral2496g00008 616 SMART arm_5 366 406 IPR000225 GO:0005515
Pral2496g00008 616 SMART arm_5 489 529 IPR000225 GO:0005515
Pral2496g00008 616 SMART arm_5 572 612 IPR000225 GO:0005515
Pral2496g00008 616 SMART arm_5 448 488 IPR000225 GO:0005515
Pral2496g00008 616 SMART arm_5 530 570 IPR000225 GO:0005515
Pral2496g00008 616 SUPERFAMILY ARM repeat 336 610 IPR016024 -
Pral2496g00008 616 FunFam RING-type E3 ubiquitin transferase 236 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2496g00008 Pral-Chr2496 65625 90049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2496g00008 1 612 U-box Gene Family AT1G23030 63.295 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2496g00008 - - gmx:100815448 937.176