Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2489g00006 ATGGATAAGTCATTGACGCATGGTGCAGCCGTAGAGGCCAGTGGGAGAAGATTCCTAGCTCGCGACATAACCTTTGAGAACACGGCTGGCCATGCGAAGCACCAAGTCGTCGCAGTCCAGGTAGGTGCCGACTTCACCGTCTTCTACCAGTGCGCCTTCCTCCCTCACCAGTTGTCCTCTAGGTCCACCGCAACCGTCAGTTCTTCATCAACCGCCTCCTTGCCGGCACCGTTTACTTCATCTTTGGCAACTCCGCTGCCCTATTCCAAGACTGCGAGAAGAACATGGTCATCGCACAGGGACGGGTTGACCCAGAACCAGAAAACCGGCATCGTGATCCAGAAGTGCCGTATCGGAGCAATGAAGAACCTGGAGTGGTACTGCCTAGCAGCCAAATATGAAAGTGGAGGGAACACTTGA 420 0.5452 MDKSLTHGAAVEASGRRFLARDITFENTAGHAKHQVVAVQVGADFTVFYQCAFLPHQLSSRSTATVSSSSTASLPAPFTSSLATPLPYSKTARRTWSSHRDGLTQNQKTGIVIQKCRIGAMKNLEWYCLAAKYESGGNT 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2489g00006 139 PANTHER PECTINESTERASE 8 123 - -
Pral2489g00006 139 Gene3D - 3 69 IPR012334 -
Pral2489g00006 139 Pfam Pectinesterase 7 57 IPR000070 GO:0030599|GO:0042545
Pral2489g00006 139 SUPERFAMILY Pectin lyase-like 5 128 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2489g00006 Pral-Chr2489 73649 74145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2489g00006 7 124 Carbohydrate Esterase AT1G53830 42.969 5.36e-24 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2489g00006 K01051 - thj:104810396 90.8929