Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2488g00009 ATGCCACACTCAAAAGAATCGAAGAGCAAACGGTGCGGCCGCCGGCGGTTTTTTAAGTTTTCCTTTTTCGCGGTTCTTAACATCAGGTTTCATCAAAACACTGAAACGATGACCCGTGTTTATGTTGGTAACTTGGATTCCAGAGTTACTGAGAGAGAGCTTGAAGATGAATTTCGTGTATTTGGAGTTATACGGAGTGTCTGGGTTGCGCGGAGACCGCCTGGTTATGCCTTCATTGATTTTGATGACCGCAGAGATGCACAGGATGCCATTCGTGAATTAGATGGTAAGAATGGTTGGAGGGTGGAGCTTTCTCACAACTCAAGAGTTGGCAGTGGTGGTGGAGGTGGTCGTGGTCGTGGTCGCTCTGGTGGCTCTGATTTGAAATGTTATGAGTGTGGTGAGCCTGGTCATTTCGCTCGCGAATGTCGTACGCGTGGTGGTGCAGGAAGACGACGTAGCCGCAGTCCGCCGAGATACCGCAGGAGCCCAAGTTATGGGCGCAGGAGTTACAGTCCTCGTGGGGATCGGTCCCCTAGGCGACGCAGTTTGTCACCTCGTGGACGCAGCTATAGTAGGTCACCTCCTTACCATGGACCTGAGGAGCTACCATATACAAATGGAAATGGTCTAAGGGAACGGCACCGCAGTAGAAGCTGA 660 0.5121 MPHSKESKSKRCGRRRFFKFSFFAVLNIRFHQNTETMTRVYVGNLDSRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRVGSGGGGGRGRGRSGGSDLKCYECGEPGHFARECRTRGGAGRRRSRSPPRYRRSPSYGRRSYSPRGDRSPRRRSLSPRGRSYSRSPPYHGPEELPYTNGNGLRERHRSRS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2488g00009 219 CDD RRM_SRSF3_like 39 107 - -
Pral2488g00009 219 Gene3D - 124 182 - -
Pral2488g00009 219 SMART rrm1_1 39 105 IPR000504 GO:0003723
Pral2488g00009 219 FunFam Serine/arginine-rich splicing factor 7 38 105 - -
Pral2488g00009 219 MobiDBLite consensus disorder prediction 141 219 - -
Pral2488g00009 219 Pfam Zinc knuckle 129 144 IPR001878 GO:0003676|GO:0008270
Pral2488g00009 219 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 198 - -
Pral2488g00009 219 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Pral2488g00009 219 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Pral2488g00009 219 MobiDBLite consensus disorder prediction 105 125 - -
Pral2488g00009 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Pral2488g00009 219 Gene3D - 31 109 IPR012677 -
Pral2488g00009 219 FunFam Serine/arginine-rich splicing factor RSZ22A 126 187 - -
Pral2488g00009 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 109 IPR000504 GO:0003723
Pral2488g00009 219 SUPERFAMILY RNA-binding domain, RBD 31 123 IPR035979 GO:0003676
Pral2488g00009 219 SUPERFAMILY Retrovirus zinc finger-like domains 110 149 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2488g00009 Pral-Chr2488 18677 22366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2488g00009 38 95 Eukaryotic Initiation Factors Gene Family AT4G34110 39.683 1.17e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2488g00009 K12896 - vvi:100262399 236.498