Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2488g00008 ATGAAAGTTTGTTGCAGGTTTCATCAAAACACTGAAACGATGACCCGTGTTTATGTTGGTAACTTGGATTCCAGAGTTACTGAGAGAGAGCTTGAAGATGAATTTCGTGTATTTGGAGTTATACGGAGTGTCTGGGTTGCGCGGAGACCGCCTGGTTATGCCTTCATTGATTTTGATGACCGCAGAGATGCACAGGATGCCATTCGTGAATTAGATGGTAAGAATGGTTGGAGGGTGGAGCTTTCTCACAACTCAAGAGTTGGCAGTGGTGGTGGAGGTGGTCGTGGTCGTGGTCGCTCTGGTGGCTCTGATTTGAAATGTTATGAGTGTGGTGAGCCTGGTCATTTCGCTCGCGAATGTCGTACGCGTGGTGGTGCAGGAAGACGACGTAGCCGCAGTCCGCCGAGATACCGCAGGAGCCCAAGTTATGGGCGCAGGAGTTACAGTCCTCGTGGGGATCGGTCCCCTAGGCGACGCAGTTTGTCACCTCGTGGACGCAGCTATAGTAGGTCACCTCCTTACCATGGACCTGAGGAGCTACCATATACAAATGGAAATGGTCTAAGGGAACGGCACCGCAGTAGAAGCTGA 591 0.5127 MKVCCRFHQNTETMTRVYVGNLDSRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRVGSGGGGGRGRGRSGGSDLKCYECGEPGHFARECRTRGGAGRRRSRSPPRYRRSPSYGRRSYSPRGDRSPRRRSLSPRGRSYSRSPPYHGPEELPYTNGNGLRERHRSRS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2488g00008 196 MobiDBLite consensus disorder prediction 118 196 - -
Pral2488g00008 196 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Pral2488g00008 196 SUPERFAMILY Retrovirus zinc finger-like domains 87 126 IPR036875 GO:0003676|GO:0008270
Pral2488g00008 196 Gene3D - 8 86 IPR012677 -
Pral2488g00008 196 ProSiteProfiles Zinc finger CCHC-type profile. 106 121 IPR001878 GO:0003676|GO:0008270
Pral2488g00008 196 Pfam Zinc knuckle 106 121 IPR001878 GO:0003676|GO:0008270
Pral2488g00008 196 FunFam Serine/arginine-rich splicing factor RSZ22A 103 164 - -
Pral2488g00008 196 SMART rrm1_1 16 82 IPR000504 GO:0003723
Pral2488g00008 196 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Pral2488g00008 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 86 IPR000504 GO:0003723
Pral2488g00008 196 Gene3D - 101 160 - -
Pral2488g00008 196 FunFam Serine/arginine-rich splicing factor 7 15 82 - -
Pral2488g00008 196 CDD RRM_SRSF3_like 16 84 - -
Pral2488g00008 196 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 15 175 - -
Pral2488g00008 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 74 IPR000504 GO:0003723
Pral2488g00008 196 MobiDBLite consensus disorder prediction 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2488g00008 Pral-Chr2488 18677 22487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2488g00008 12 73 Eukaryotic Initiation Factors Gene Family AT2G36660 39.394 1.80e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2488g00008 K12896 - vvi:100262399 236.498