Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2487g00001 ATGGCGAAGTCGTCGCGCGGCGAGAAGGCAACACTGAGGAAAGGACCATGGACCCCTGAGGAAGACCAGAAGCTCATGGCTTACATTCAACAACATGGCCATGGAAATTGGTCTTCCTTGCCTGCAAAAGCTGGACTCCGAAGATGCGGGAAGAGCTGCAGACTGAGATGGACTAATTACCTAAGACCTGACATCAAACGAGGCAACTTCAGCTCGCAAGAAGACCAAACCATTATTCAACTTCATGCTCTTCTTGGAAACAGATGGTCGGCTATAGCACTTCGTTTGCCAAAAAGAACAGACAATGAGATCAAGAACCACTGGAACACCCACCTCAAGAAGAGGCTCACCAGAATGGGAATAGACCCCACCACTCACAAACCCATAAACGACGTCGTACACGGCCGTTCCAAGGATGCAGCCAACCTCAACCATATGGCTCAGTGGGAGACTGCTCGGCTCCAAGCCGAATCCAGACTGGTCAGAGAATCCAAGCTGCGGCTCCGGATCAACGAGCTTATCAACTCCTTCTGTTCCCAAGCTTCTCCCACTCGACTCAATTCATGGTCGCCGACGTCGCAGTCTCCAACTCCGACAACTACTGCTGATAACATTCCCAAAATGCATAGCATGTATGCCATGATGCTCGCCACCGAGGACGACCTAAAGTCGCCGACGTCGACATTAAGCTTCACAGACACAATTATACCCAACTTTGGACTTATCAATCAAAGCTTATTACTTCCTTCTTCCAACGCCGGAGGGGACAGTGGAATAATCATGAAAGAAGCGAGTGATGGTGCGTCATATTGCGAAAACTCTGTGGGAAGCTTGATGAGAGACGACGACATTATGGTGGCCGTGGAAGGATTCAGATCAAGAGGGTATAACTGTAACAATTCCATGGCAGGCCTGCAAAATGACGATGAGTTGGCGTATGGATTCCATGAGATCTCACCACAACAAAACCTGGGAGTCTTAAATATCGGGGAAGAAGGAAGCACCAACTTTGAGGAGAAGCATTATTGGGAAACCATACTCAACTTGGTCAATGATTTTCCCTGA 1065 0.4873 MAKSSRGEKATLRKGPWTPEEDQKLMAYIQQHGHGNWSSLPAKAGLRRCGKSCRLRWTNYLRPDIKRGNFSSQEDQTIIQLHALLGNRWSAIALRLPKRTDNEIKNHWNTHLKKRLTRMGIDPTTHKPINDVVHGRSKDAANLNHMAQWETARLQAESRLVRESKLRLRINELINSFCSQASPTRLNSWSPTSQSPTPTTTADNIPKMHSMYAMMLATEDDLKSPTSTLSFTDTIIPNFGLINQSLLLPSSNAGGDSGIIMKEASDGASYCENSVGSLMRDDDIMVAVEGFRSRGYNCNNSMAGLQNDDELAYGFHEISPQQNLGVLNIGEEGSTNFEEKHYWETILNLVNDFP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2487g00001 354 CDD SANT 69 112 IPR001005 -
Pral2487g00001 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral2487g00001 354 FunFam MYB-related transcription factor 13 66 - -
Pral2487g00001 354 CDD SANT 16 61 IPR001005 -
Pral2487g00001 354 SMART sant 13 63 IPR001005 -
Pral2487g00001 354 SMART sant 66 114 IPR001005 -
Pral2487g00001 354 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral2487g00001 354 Gene3D - 14 66 - -
Pral2487g00001 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 210 - -
Pral2487g00001 354 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral2487g00001 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral2487g00001 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral2487g00001 354 Gene3D - 69 140 - -
Pral2487g00001 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral2487g00001 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral2487g00001 354 MobiDBLite consensus disorder prediction 183 204 - -
Pral2487g00001 354 FunFam MYB transcription factor 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2487g00001 Pral-Chr2487 22912 24382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2487g00001 1 354 MYB Transcription Factor Family AT3G01140 46.575 4.17e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2487g00001 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2487g00001 K09422 - gmx:100809025 352.443