Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2480g00003 ATGGAGTTGGAAGTGAAGTTGGTAGGGAACATAGACAACTGCTTCGTATCTCTTCCTCTTCCTCTTATCCAACTTCTGCATTCCACACGGTCGACGCCCCTCCCTCATATTCTCACCCTCGAGCTTCGCTCTCGCTCTGATGATCTCTGGTTCGTTGCTTGGTCCGGAGCCACTTCTAACTCTAATGCCATAGAGGTTGCGCAACATTTTGCAGAATGCATTTCCTTGCCAGATCATGCTAGAGTGCAAGTAAAAGCTGCTTCTAACGTGCCACACGCTTCTCTGATTACAATAGAACCCCATACAGAAGACGACTGGGAAATTTTGGAGCTGAACTCTGAGCAAGCTGAGGCAGCAATTTTAAACCAGGTAAGGATTGTCCATGAAGGAATGAGATTTCCTTTGTGGTTGCATGGTCACACAATGATTACGTTCTTTGTTGCTTCTGTTATTCCCAAGAAAGCGGTGGTGCAACTCATGCCAGGAACTGAAGTAGCAGTTGCCCCAAAAAGACGTAAAAGGTTTTCAGATTCACTTGCGGACTTGCATCCAGATTCCTATAATAGACAACACACTTCAAAGATGCTGCTTCGCATACAGGATCCAGACCAGTCGTGTCACACTAGTGCTTGTGTCAAAGGAGTTGATCTTCATATGGAGCTTACTTCTGCTGCTTTTGTTCACCCAGAAACAAGCAAACGGTTGTCACTCAATAATAGGCTTCAGTTGGTCTACATAGTTCCAAGAATAGCTAACAAGAAGGCCAATGGTGCTTCCAAAACGAACATTATGAAAACAAAAGGCAGTTCAGCTACTAGGGAAGTTGACTCTGGAAATTTAACTGATGATAAAGGATGTAGGCAAGCAATTGTTTATCTTCTGCTTTCAGAGTCAGTGGCCAAGGGACATGTGATGGTTTCTAAATCTCTTCGACAGTATTTAAGAGCTGGTCTGCATTCATGGGTCTATTTGAAGGCATGTGATGTTAATTTGGAAAAAGCTATTCCCTCCTTCTCTCTTTCTCCTTGCCACTTCCGAATGTTAAGGCAAGACAATGATGGTGATAATCATATAGATAAGAACAAGCTCACAAGGACTGCATCAGGTGTCTTTGGAGATCTTGTGGATTGGTCTATCCATAATGAAGTTATTAACGTTCTTTCAGATGAATCCCATTCTCAAGCAGATGAAGATGTTGCAAATCAGTCGGAGAATCTAAATGGACTACAGCATCTTCTAAGACTATGGTATATTGCACAACTTGATGCGGTTGCTTCCTTTACTGGTATGGAGGTTAATGCACCAGTATTGGGTAGTAAAACCTTACTTCATTTTGAAGTCAGTTACATAAAGCTTGGGATTAATGGAAAGGTTCAGTTGGCTTCTAATTCATCAGAAAACAGAAACAAGACAGCTGAACTATTGTTTTTGCTAACTATTGGTGAAGATTCCTTGCATCACGGAAAAATCACTGCATATGAAATTGCACTTGGTGAAAGAAACAAAATGAACAGAAATCCAGCAGATCAACAGCTGTTTAAAAGGCTAAAGTTCACTGATCCCGTGTCTATCCAATCTCTAGAAGATAAAATATCTGAAGAACATATTACTTCAGAAGTAACAAGCCTTGACTTGATGGGGGCAACTGCTTCTGATGTTATCAATAGGGTGACAGTATTGTTATCTTCTGCTTCTGGTATGTGGTTTGATTCATATGACTTGCCGCTCCCAGGACATATTCTTATATATGGACCTTCAGGCTCTGGCAAAACTTCACTAGCAAGGACTGTTGCAAAGTACTTTGAGAAACATGGAGACATCTTAGCACACATAATTTTTGTTTCTTGTTCAAAATTAGCTTTGGAGAATGTCCCAACAATCCGGAAAGAAGTTACTAACAACGTTATGGAAGCTTTAGATCATGCACCTTCTATTGTCATCTTTGATGATCTTGATAGCATGATTTCCACCTCTGAGTCGGAAGGGCCTCAACTTTCAATGTCTGCTGCTGGACTCGCAAGTTTTCTGACTGACATTATTGATGAATATGGGGAGAGAAGGCGAAAATCATGTGGGTTTGGACCAATAGCCTTCATAGCTTCTGTACAAGCTCTTGAGAAGATACCACAATCTTTAAGCTCTTCAGGGAGATTTGACTTTCACATACAGCTGCCAGCTCCTGCAGCTTCAGAGCGGGAGGCTATGTTGAGGCATGAAATAAAAAGGCGTCAATTGGAATGTGCTGATGACATCCTGCTTGACGTAGCTGTCAAATGTGATGGCTATGATGGTTATGATCTGGAAATATTGGTTGATAGAGCTGTCCATGCTGCTGTTTCCCGCTTTCTCCCATCAAATGCTGCTCTTAATGAGCATGAGAGCCCTTTACTTATGGAAGATTTCTCTCAGGCAATGCATGATTTTCTTCCAGTTGCAATGCGAGACATTACAAAAGCTTCTTCTGATGGTGGACGCTCTGGCTGGGATGATGTGGGAGGCCTTGATGACATTCAAAACACCATTAAGGAGATGATAGAGTTGCCTTCTAAGTTTCCAAGAACTTTTGCGCAAGCTCCTTTGAGGTTAAGATCAAACGTCCTTTTATATGGACCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCAGCTGCTGCTGCTTGTTCTCTACGTTTCATATCTGTGAAAGGGCCAGAACTGTTGAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCTGCGGCAGCACCATGTCTACTCTTTTTTGATGAATTCGATTCGATTGCCCCCAAGAGAGGACATGACAATACTGGAGTCACTGATCGTGTTGTGAATCAATTTCTGACCGAGTTAGATGGTGTTGAGATTTTAACAGGGGTATTTTTTTTTGCTGCTACCAGTAGACCGGATTTGCTTGATGCGGCACTTTTAAGACCAGGCAGGTTAGATCGACTTCTGTTCTGTGACTTTCCATCTCAGCAGGAAAGGCTTGAAATTCTTACCGTACTTTCCAGAAAGTTGCCCCTGGCCAGTGATGTGGATTTGGCTGCTGTAGCTCATATGACCGAAGGATTTAGTGGAGCTGATCTCCAAGCTCTCCTTTCAGACGCCCAACTTGCAGCAGTTCATGAAGTCTTGGATGATGCGAACACCTCTGGGCCTGAGAGAAGACCGGTTATTACAGACACTCTTCTCAAGGTTATTGCCTCCAGGGCTAGACCGTCTGTTTCAGATGAGGAGAAAAGAAGACTTTACAGCATTTACAGCCAGTTCCTAGATTCAAAGAGATCTGTTGCTGCTCAGTCAAGAGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3360 0.4271 MELEVKLVGNIDNCFVSLPLPLIQLLHSTRSTPLPHILTLELRSRSDDLWFVAWSGATSNSNAIEVAQHFAECISLPDHARVQVKAASNVPHASLITIEPHTEDDWEILELNSEQAEAAILNQVRIVHEGMRFPLWLHGHTMITFFVASVIPKKAVVQLMPGTEVAVAPKRRKRFSDSLADLHPDSYNRQHTSKMLLRIQDPDQSCHTSACVKGVDLHMELTSAAFVHPETSKRLSLNNRLQLVYIVPRIANKKANGASKTNIMKTKGSSATREVDSGNLTDDKGCRQAIVYLLLSESVAKGHVMVSKSLRQYLRAGLHSWVYLKACDVNLEKAIPSFSLSPCHFRMLRQDNDGDNHIDKNKLTRTASGVFGDLVDWSIHNEVINVLSDESHSQADEDVANQSENLNGLQHLLRLWYIAQLDAVASFTGMEVNAPVLGSKTLLHFEVSYIKLGINGKVQLASNSSENRNKTAELLFLLTIGEDSLHHGKITAYEIALGERNKMNRNPADQQLFKRLKFTDPVSIQSLEDKISEEHITSEVTSLDLMGATASDVINRVTVLLSSASGMWFDSYDLPLPGHILIYGPSGSGKTSLARTVAKYFEKHGDILAHIIFVSCSKLALENVPTIRKEVTNNVMEALDHAPSIVIFDDLDSMISTSESEGPQLSMSAAGLASFLTDIIDEYGERRRKSCGFGPIAFIASVQALEKIPQSLSSSGRFDFHIQLPAPAASEREAMLRHEIKRRQLECADDILLDVAVKCDGYDGYDLEILVDRAVHAAVSRFLPSNAALNEHESPLLMEDFSQAMHDFLPVAMRDITKASSDGGRSGWDDVGGLDDIQNTIKEMIELPSKFPRTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFFFAATSRPDLLDAALLRPGRLDRLLFCDFPSQQERLEILTVLSRKLPLASDVDLAAVAHMTEGFSGADLQALLSDAQLAAVHEVLDDANTSGPERRPVITDTLLKVIASRARPSVSDEEKRRLYSIYSQFLDSKRSVAAQSRDAKGKRATLA 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2480g00003 1119 Pfam Peroxisome biogenesis factor 1, N-terminal 96 169 IPR015342 GO:0005524|GO:0005777|GO:0007031
Pral2480g00003 1119 SUPERFAMILY ADC-like 10 86 IPR009010 -
Pral2480g00003 1119 Gene3D - 91 170 - -
Pral2480g00003 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 806 IPR027417 -
Pral2480g00003 1119 FunFam Nuclear valosin-containing protein-like 824 1003 - -
Pral2480g00003 1119 SUPERFAMILY Cdc48 domain 2-like 91 169 IPR029067 -
Pral2480g00003 1119 Gene3D - 997 1098 - -
Pral2480g00003 1119 PANTHER AAA-FAMILY ATPASE 228 1093 - -
Pral2480g00003 1119 SMART AAA_5 862 998 IPR003593 GO:0016887
Pral2480g00003 1119 SMART AAA_5 576 728 IPR003593 GO:0016887
Pral2480g00003 1119 FunFam PeRoXisome assembly factor 997 1073 - -
Pral2480g00003 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 1085 IPR027417 -
Pral2480g00003 1119 Gene3D - 814 995 IPR027417 -
Pral2480g00003 1119 Pfam ATPase family associated with various cellular activities (AAA) 580 725 IPR003959 GO:0005524|GO:0016887
Pral2480g00003 1119 Pfam ATPase family associated with various cellular activities (AAA) 866 993 IPR003959 GO:0005524|GO:0016887
Pral2480g00003 1119 FunFam Peroxisome biogenesis protein 1 533 727 - -
Pral2480g00003 1119 Pfam AAA+ lid domain 1018 1053 IPR041569 -
Pral2480g00003 1119 Gene3D - 728 807 - -
Pral2480g00003 1119 Gene3D - 531 727 IPR027417 -
Pral2480g00003 1119 FunFam Peroxisome biogenesis factor 1 91 170 - -
Pral2480g00003 1119 CDD RecA-like_PEX1_r2 837 994 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2480g00003 Pral-Chr2480 23565 45787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2480g00003 580 796 Calmodulin-binding Proteins AT3G56690 27.039 3.05e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2480g00003 K13338 - gmx:100803882 1618.59