Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2479g00003 ATGCCTCCAAACCAAAAGGCTAGGCACAAAACGCCTTTGTCATCTTCTATGCCTCATAAGAATTTGAGAAGTCTGCAGAATTCGGATGTGGGTTCAAAAATTGATTCTGATCAATGTCAAGGAACAGAGTTTAAGAAATCAACAAATGCAGAATTGAAATTTCCTAAGAAGGAACCAGAAGAAGAATTGAGGATTTTTACCAAGAGTGCATGCTTGAATTCTAAGCATAGAAGGAAGAAAGCATTAACTACTGTGGAAAAGATCAGAGCTTTAAACAATGCAAGTTCTTTTGAATCTGAAAATCCCTTTTTCATGGTAATCATGCAGCCTTCATATGTCCGTCGTAAATGTTACTTGGTGATGCCAATAAAATTCACTAAAAGACATTTGAAGAAAGAGTGTGGTGTTGTAAAACTTGAAGCCTTGGATGGGAGAACTTGGCCTGCTAGGTATGAGATTCCCAGAATCAAAGATGGATGGAAGAAGTTTGTAATGGAAAATGGTTTGAAAGTGGGTCAAGTTTGTGTTTTTGAACTGATTGGTCGCATTTTCAAAGTACATATTTTCGGGGACAAGGAAGAAGTTAAAAGCAGAAAGAAGACTTGCAGTCTTGCAGAAGATCTGAAAGTTAATCCTGTTAAAAAAGAGCAGATCAGCAGTATTCAAGAGACTTCTCTTGAAAAGGCTAGCTCTTTCAAACCTAAATATCCTCATTTTATGGTTAAGATGACACATAATTACATTTGGGGCAAATCAAACTTGCATGTGCCAGTAGAATTTGCAAGAATACATCTTCGTGACTGCAATGAGAGTGTGAAACTTGTTGTGCAAGATGTAGCTTGGCCTGTTGAGCATGTATTTAGAATAACACTTCCAGGAACTGCAATTCATGAACTTTCTCTTTGTGGATGGAAGCAGTTTTGCCAGGATAATGAGTTAAAAGTAGGTGATGTTTGCATCTTCGAGCTCATCCCCGACGTCAATCCTACATTTCGAGTGACAATTTTGCGAGCCACTGAACACGTAGTTCATTCAACAAACTCAGGGAGATATGGAAGATGTTTGTCCAACCCAGTGAGTCTGAAGCCTCCTGATGGTAAAGAATGGAGAGTGTATTGGACAAAACGTGATAATGAATTTTGGTTTCAAAAGGGATGGAAGGAATTTGCTAACTTTTATTCTCTAGATGATGGTTTTTTGGTTTTGTTCAAATATGAAGGAACTTCTCAGCTTCACGTACACATAATTGACAAGAGCGCCCTAGAAATAGATTATCCTTTATCTAGGTATGCCTCTAGTCAAGAGGATAACCTTGATAATCTCAGTGATGATATAATTGACATCTTGGATGAGACAACTCCAAGCCCTGAGGCTAGTCAAAATGCGCCCTTGTCATCTTCTAGGCCTCATAAGAAAATGAGAAGTACTGCAGATGAAGATGTTGAAATGAGTATGCCAGCGGGCATGAAAACTAAAAACTGGCAATTTCAAGGAACAAAATTTCAGAAATCAATCAATGCAGACTTGAAATTTTCTAAGCAGAAATCTGAAGGAGACACAGAAGCAAGAATTTTCGACAAGAATAAATGTCTGAATTCTGAGCATAAAAGGAAGAAAATGTTAACTGATGTGGAAAAGAACAAAGCTTTGGAAAGTGCCATTTCTTTCAAATCTGATAATCCCTATTTCATGATGGTCATGCAGCCTTCATATGTCTCTCCTAAATCTTACTTGCCAATACCGAAAGAATTTGCTAGAAAACATTTGAAGGAAGAGTGTGAAGTTGTGCAACTTAAGACCTTGGATGGGAGAATTTGGCATGCTAAGTATAACTTTCCGAAAATTGGAGAAGGCTGGAGGAAGTTTGTGAAAGAAAATGGTTTGGAAGTGGGGCATGTTTGTGTATTTGAAATGATTGATCTCTCGTTGAAAGTACATATTTTCAGAGATGCTGAAAAAGTAAATCTGAAAGTAAACTCTTTTGAAAAGGAGCAGAGTAGCAGTATGCAAGATCCACCTCTTGAAAAGGGTATGCAACATCCACCTCTGGAAAAGGTTATGCAACATCGACCTCTTGAAAAGGATAGCTCTTCCCAACCTGAAAATCCTCATTTTATGTACGTGCCAATTGAATTTGCAAAAGCACATCTTCGTAATGGTCCTAAGAGTGTCACACTTATTGTACAAGATAAAGATTGGACTGTTGGGTACGCTTTCAGAAGTTATGATAAACATCAACAAAGTGCTCAATTTTCTTGGGGATGGAAGCAATTCTGTAAGGATAATGACTTGAAAGTAGGTGATGTTTGTGACTTTGAGCTCACTGAGAAATTCAGATTTCAAGTGGGAGCAAGAAGCCAATACAGAAGTTTGTAG 2376 0.3792 MPPNQKARHKTPLSSSMPHKNLRSLQNSDVGSKIDSDQCQGTEFKKSTNAELKFPKKEPEEELRIFTKSACLNSKHRRKKALTTVEKIRALNNASSFESENPFFMVIMQPSYVRRKCYLVMPIKFTKRHLKKECGVVKLEALDGRTWPARYEIPRIKDGWKKFVMENGLKVGQVCVFELIGRIFKVHIFGDKEEVKSRKKTCSLAEDLKVNPVKKEQISSIQETSLEKASSFKPKYPHFMVKMTHNYIWGKSNLHVPVEFARIHLRDCNESVKLVVQDVAWPVEHVFRITLPGTAIHELSLCGWKQFCQDNELKVGDVCIFELIPDVNPTFRVTILRATEHVVHSTNSGRYGRCLSNPVSLKPPDGKEWRVYWTKRDNEFWFQKGWKEFANFYSLDDGFLVLFKYEGTSQLHVHIIDKSALEIDYPLSRYASSQEDNLDNLSDDIIDILDETTPSPEASQNAPLSSSRPHKKMRSTADEDVEMSMPAGMKTKNWQFQGTKFQKSINADLKFSKQKSEGDTEARIFDKNKCLNSEHKRKKMLTDVEKNKALESAISFKSDNPYFMMVMQPSYVSPKSYLPIPKEFARKHLKEECEVVQLKTLDGRIWHAKYNFPKIGEGWRKFVKENGLEVGHVCVFEMIDLSLKVHIFRDAEKVNLKVNSFEKEQSSSMQDPPLEKGMQHPPLEKVMQHRPLEKDSSSQPENPHFMYVPIEFAKAHLRNGPKSVTLIVQDKDWTVGYAFRSYDKHQQSAQFSWGWKQFCKDNDLKVGDVCDFELTEKFRFQVGARSQYRSL 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2479g00003 791 CDD B3_DNA 237 337 IPR003340 GO:0003677
Pral2479g00003 791 Coils Coil 431 451 - -
Pral2479g00003 791 SMART B3_2 697 788 IPR003340 GO:0003677
Pral2479g00003 791 SMART B3_2 104 192 IPR003340 GO:0003677
Pral2479g00003 791 SMART B3_2 239 339 IPR003340 GO:0003677
Pral2479g00003 791 SMART B3_2 563 652 IPR003340 GO:0003677
Pral2479g00003 791 SMART B3_2 342 419 IPR003340 GO:0003677
Pral2479g00003 791 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 50 193 IPR044837 -
Pral2479g00003 791 CDD B3_DNA 704 782 IPR003340 GO:0003677
Pral2479g00003 791 CDD B3_DNA 561 649 IPR003340 GO:0003677
Pral2479g00003 791 ProSiteProfiles B3 DNA-binding domain profile. 104 192 IPR003340 GO:0003677
Pral2479g00003 791 Gene3D - 219 342 IPR015300 -
Pral2479g00003 791 Gene3D - 81 193 IPR015300 -
Pral2479g00003 791 Gene3D - 660 786 IPR015300 -
Pral2479g00003 791 Gene3D - 540 654 IPR015300 -
Pral2479g00003 791 SUPERFAMILY DNA-binding pseudobarrel domain 99 182 IPR015300 -
Pral2479g00003 791 SUPERFAMILY DNA-binding pseudobarrel domain 232 338 IPR015300 -
Pral2479g00003 791 MobiDBLite consensus disorder prediction 8 47 - -
Pral2479g00003 791 MobiDBLite consensus disorder prediction 451 480 - -
Pral2479g00003 791 Pfam B3 DNA binding domain 359 418 IPR003340 GO:0003677
Pral2479g00003 791 Pfam B3 DNA binding domain 563 649 IPR003340 GO:0003677
Pral2479g00003 791 Pfam B3 DNA binding domain 104 189 IPR003340 GO:0003677
Pral2479g00003 791 Pfam B3 DNA binding domain 704 786 IPR003340 GO:0003677
Pral2479g00003 791 Pfam B3 DNA binding domain 239 338 IPR003340 GO:0003677
Pral2479g00003 791 CDD B3_DNA 355 417 IPR003340 GO:0003677
Pral2479g00003 791 ProSiteProfiles B3 DNA-binding domain profile. 359 419 IPR003340 GO:0003677
Pral2479g00003 791 SUPERFAMILY DNA-binding pseudobarrel domain 700 784 IPR015300 -
Pral2479g00003 791 Gene3D - 343 420 IPR015300 -
Pral2479g00003 791 CDD B3_DNA 102 189 IPR003340 GO:0003677
Pral2479g00003 791 MobiDBLite consensus disorder prediction 453 470 - -
Pral2479g00003 791 ProSiteProfiles B3 DNA-binding domain profile. 239 339 IPR003340 GO:0003677
Pral2479g00003 791 SUPERFAMILY DNA-binding pseudobarrel domain 351 419 IPR015300 -
Pral2479g00003 791 SUPERFAMILY DNA-binding pseudobarrel domain 558 645 IPR015300 -
Pral2479g00003 791 ProSiteProfiles B3 DNA-binding domain profile. 691 788 IPR003340 GO:0003677
Pral2479g00003 791 MobiDBLite consensus disorder prediction 1 50 - -
Pral2479g00003 791 ProSiteProfiles B3 DNA-binding domain profile. 563 651 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2479g00003 Pral-Chr2479 21491 38260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2479g00003 688 784 B3 DNA Binding Superfamily AT3G18990 29.204 1.80e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2479g00003 B3 5.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2479g00003 - - pcin:129304822 444.891