Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2472g00004 ATGGCGGTTTCTGGCGAGCGAAGTGAATCTTCATCCTCGTCCTTCTCCTTGTCCAATTTAACTCAGGCATTTCCTTTCTCTTCTGGAAACCCTAGAATCGAGGAGACTAGAGGCGTCATGCATCTCTATCGCGAGGATCCCACGTCCTCATCGCCTTCTGATCTTCCTGTTGGACGGAAACCACTTGTCTGTGTGCTTGGAGTGCCAAATCACATGACCTATGCAGATTTTTGCCAGTTCTGCGGTTCATTTATTCAGCACATCTTAGAGATGCGGATTGTCAGAAATGATGGGATGGAAGATCAGTACAGTGTTTTAATTCGTTTTGATGACCAAGATTCTACAGATGGTTTCTACAAGCATTATAATAGGCGTCGTTTCTCATCTATGGAGGTGGAAGTTTGCTGTGTTCTGTTCACATTGGATGTGCAGTACACTGGCCTGATTGAACATGCGCAGGCATCTAATGCTAGCTCAACTGAACAGCCTGCATGTCCAGTGTGCTTAGAGAGATTGGATCAAGATACAAGTGGAATTCTTACAACTATTTGCAATCATTCTTTCCATTGTTCCTGTATATCAAAATGGGCGGATTCATCTTGTCCTGTATGCCGATATTGTCAGCAGCAGGCTGAAAAATCTACATGTTTTGTTTGTCAAACCACTGAAAACCTCAGCATATGCGTTATTTGTGGGTTTGTTGGCTGTGGAAAATACAAAGCAGGACATGCCAAAATACACTGGAAAGAGACACAGCATTGCTACTTCCAAGAAGTGGAAACACAGAGAGTATGGGATTATGTGAAAGACAACTATGTTCATAGACTAATCCTGTCCAAAACTGATGGGAAGTTAGTTGAGTTAAACTCTCACTGTGAGCATGCAGGCACTGGATGTGGAAGTTGCAGCTGTGAAGATAATGCTATGAGTGAGGCTATACTTAACAGTAAAGTCGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCTACACAACTTGAAAACCAAAAATTATACTTTGAGTCCTTACTACAAGAAGTAAAAGAAGAAACTGAAAGAGAAATTTCTAAAGCTGTTGAGAAGGCCGTTGCTGTTAAGCTGCAGAAGTTGCAGTCCAAGCTTGACAGATGTTATAAGGAGAAGAAATTTTTGGATGATCTAAATGAGAATCTGCTGAAAAATCAGGAGATCTGGAAAGCCAAGATACTTGAGATTGAAGAAAGTTAA 1227 0.414 MAVSGERSESSSSSFSLSNLTQAFPFSSGNPRIEETRGVMHLYREDPTSSSPSDLPVGRKPLVCVLGVPNHMTYADFCQFCGSFIQHILEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYKHYNRRRFSSMEVEVCCVLFTLDVQYTGLIEHAQASNASSTEQPACPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSTCFVCQTTENLSICVICGFVGCGKYKAGHAKIHWKETQHCYFQEVETQRVWDYVKDNYVHRLILSKTDGKLVELNSHCEHAGTGCGSCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETEREISKAVEKAVAVKLQKLQSKLDRCYKEKKFLDDLNENLLKNQEIWKAKILEIEES 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2472g00004 408 Pfam Ring finger domain 164 205 IPR001841 -
Pral2472g00004 408 ProSiteProfiles Zinc finger UBP-type profile. 199 292 IPR001607 GO:0008270
Pral2472g00004 408 Coils Coil 330 387 - -
Pral2472g00004 408 CDD RRM_BRAP2_like 63 144 - -
Pral2472g00004 408 PANTHER BRCA1-ASSOCIATED PROTEIN 6 407 - -
Pral2472g00004 408 CDD RING-H2_BRAP2 163 206 IPR047243 -
Pral2472g00004 408 SUPERFAMILY RING/U-box 199 280 - -
Pral2472g00004 408 ProSiteProfiles Zinc finger RING-type profile. 165 205 IPR001841 -
Pral2472g00004 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 276 IPR013083 -
Pral2472g00004 408 SMART ring_2 165 204 IPR001841 -
Pral2472g00004 408 SUPERFAMILY RING/U-box 164 208 - -
Pral2472g00004 408 Pfam Zn-finger in ubiquitin-hydrolases and other protein 216 275 IPR001607 GO:0008270
Pral2472g00004 408 SMART Zf_UBP_1 215 264 IPR001607 GO:0008270
Pral2472g00004 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 201 IPR013083 -
Pral2472g00004 408 Pfam BRCA1-associated protein 2 56 152 IPR011422 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2472g00004 Pral-Chr2472 78335 82193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2472g00004 161 205 C3H Transcription Factor Family AT1G72220 48.936 2.12e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2472g00004 K10632 - gmx:100794688 692.189