Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2472g00002 ATGGAGGTTCCATGGCAGACTTGGTTCTCCGATCTGGATATGGATGAGACCGATTTCTTCAATAATCAATCGCACAAGCCTTATAACTCTTTTGATGATGAGGATGATGTGTTTCTTAATGAGATCTTTCACCAACCTTCTTTCTCTTCTGAGAGTGACAGTACTCACTCTTCCTCTATTCAAAACACCGCCGTCACTGCCGCATCAGATGGTGGTGGTGGTGGTGGTGCCGCTGCCGCCGCTGTTACAACCCCCATCGTTAGCCGCTTATCGTTGGACAACGATTCCGGGGCCGGCCAGCTGAAGCGGCCTAACAACTCGAGCTCAACCCTCTCGAAACTTGGTAGCTTCTCGGACAAACCAGTAGCCTCGTCGTCCCCGTCAACTTATATTCTGTCCTTCGATAACTCAACAGTTCTCCCGGCCACCTCCGACGGTGGTCACCGGAAACACGAATCGGCGATCAAGAGTCGTAATCAAGAGAAATTAGAGACTAATCAAGGGACAAAGAAGACTAGAAGTTCATCCGAGACACTGGATCACATAATGGCTGAGAGAAAAAGGAGACAAGAACTCACTGAGAAGTTCATTGCACTCTCAGCGACAATCCCTGGTTTGAAGAAGATTGACAAGGCTTCAATACTAAGCGAAGCCATAATTCACGTGAAGCAACTTCAAGAGAGAGTGAAAGAGTTAGAAGAACAGAACAAGAAGATGAGTAGCTTGGAGTCCTCAGTGTCAAGGTACATGATGAAGAATAAGAAGACGTCGTCGTCGTCGTCGAGCCAGCTCTATAATAATTATAATAATAATGCTGAAGACATTCAAGAGACAACCTCCTGTGAAATGAGCTCCGATAATTACTTCAGAATTTGTGAAACCCTTCCTGAAGTTGAAGCAAGAGTTTTACACAGACAAGTCCTCATCAGAATCCACTGTGAGAATAAAAAAGGCGTCACCCTTAACTTGTTGGCTCAGCTCCACAATCTTCATTTCTCCATAATCAGTCACAGTGTGTTGCCGTTTGGAAATTCCACTCTTGATATGGTCATTATTGCTGAGGTCGATGAGGAACGCAGCATTCCAGTGAAGGAACTTGTGAAAAAGCTGAGAAAGACACTGTTGAAGACAGTTGAGTGA 1140 0.4535 MEVPWQTWFSDLDMDETDFFNNQSHKPYNSFDDEDDVFLNEIFHQPSFSSESDSTHSSSIQNTAVTAASDGGGGGGAAAAAVTTPIVSRLSLDNDSGAGQLKRPNNSSSTLSKLGSFSDKPVASSSPSTYILSFDNSTVLPATSDGGHRKHESAIKSRNQEKLETNQGTKKTRSSSETLDHIMAERKRRQELTEKFIALSATIPGLKKIDKASILSEAIIHVKQLQERVKELEEQNKKMSSLESSVSRYMMKNKKTSSSSSSQLYNNYNNNAEDIQETTSCEMSSDNYFRICETLPEVEARVLHRQVLIRIHCENKKGVTLNLLAQLHNLHFSIISHSVLPFGNSTLDMVIIAEVDEERSIPVKELVKKLRKTLLKTVE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2472g00002 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Pral2472g00002 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 240 IPR036638 GO:0046983
Pral2472g00002 379 PANTHER BHLH TRANSCRIPTION FACTOR 24 376 - -
Pral2472g00002 379 Pfam Helix-loop-helix DNA-binding domain 181 226 IPR011598 GO:0046983
Pral2472g00002 379 SMART finulus 182 231 IPR011598 GO:0046983
Pral2472g00002 379 Gene3D - 173 259 IPR036638 GO:0046983
Pral2472g00002 379 MobiDBLite consensus disorder prediction 142 180 - -
Pral2472g00002 379 MobiDBLite consensus disorder prediction 145 180 - -
Pral2472g00002 379 MobiDBLite consensus disorder prediction 93 121 - -
Pral2472g00002 379 Coils Coil 215 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2472g00002 Pral-Chr2472 29084 32244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2472g00002 180 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 41.538 1.13e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2472g00002 HLH 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2472g00002 - - pcin:129289587 475.322