Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral246g00005 ATGTACGAAGAGGCGACAGCTGGGTTTTCTGCAGGAACGGACTCGTTGTTGTCAGAAGACTGCTTCTCCCAAATCGCTTCTTCTTCTATCGCCTCACACATTCACAACCCTAGCTTTCCAGAGAATGTGGGTCTTTCTATGGAAAGTTTAGCCTTCGCTTCACAAGACGCTATGATTTCCAATTTGATGGAAGAGGTAACTCATCATGACTCGAATCAGCTAGTAATTTCCCTTGACCAGTCTAAATGGGACCCTGATGTGAACTTCCATCACCAAAATCATCATCAGCTTCAACATCAACTGCCTCCTTACCCTTTAACAGCAGATCTTCATCACTGTAATCTTCACTGCAGCTTGCCCAGTAGTTCTTCCACTTCTTCATTTGTCAACTCAACATCCTTGATCTCTTTAGGAAACCCAGCTACCCTGAAGAATTTTGAACTTCAGATTAATCCTTCTGGCCACCCAACACTGGGATTGGAAAACACAAGCGTGTCCTCTCTTTTGTTGCAGGATCCCTTTTTGCAAATGAACCTGCCTGCAGGTTGTCCAGCAAACAGAGAGTGGTTTCAATCTCTTCCTGCACGAAATGATCTTCTGATGTTTGGTGGGGAGGATGACAAAGAAGGGAGTGGGGTTGTTTCATATTTAAATGCTGGTCGTGGAAGAGAATCTGGTGATAGTAATAATGATTTCCTCAAGTTTTCCCACGATTTGGCTCCTAATAGCAGATCAAAGGGAGGAGGAGGAGGAACAGGAGGCAAAAGGGTCAGACAGGTCACTATTGAGAAGAAAAGGAGAGTGGATTTTACTAGCAAATTTGATGCCTTAAGAGAGCTCATCCCAAATCCCACCAAGAATGATAGAGCATCTCTGCTTTGTGGTGCTATTGAGTACATCCAAGAGCTTCGCAGATCAGTGCATAATCTCACATTATTAGTGAATAAAAAGAGATCATCATGTGGGAAAGAAAGGATCAAGAGGCAAAAGGTTGAGGAGGAAGAAGAAGAACAAGAAGAAGAAGCTTTAGGGGACTTGGAAAGCTGCAACTTGAAGCCGCTCAGTGAACCAGATCATCATCAACGTCTTCTTCCAATCAATAGATGCATAATTAAGAGCGCTTGGCTTCAGAAGAAATCTGAAGACACAGAGGTTGATGTTCGAATCGTTGATGACGATGTCACAATCAAGCTTGTTCAGAGAAAGAACGCTAACTGCTTGCTGTATGCTTCCAAGGCTCTGGATGAACTTGAGCTTGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTTTTTGTTCAACAGCAAGATATATGAAGGTTCTTCTGTGTGCGCGAGTGCCATAGCCAACAAGCTAATAGAAGTCATGGAAGCAAGTTGA 1392 0.4368 MYEEATAGFSAGTDSLLSEDCFSQIASSSIASHIHNPSFPENVGLSMESLAFASQDAMISNLMEEVTHHDSNQLVISLDQSKWDPDVNFHHQNHHQLQHQLPPYPLTADLHHCNLHCSLPSSSSTSSFVNSTSLISLGNPATLKNFELQINPSGHPTLGLENTSVSSLLLQDPFLQMNLPAGCPANREWFQSLPARNDLLMFGGEDDKEGSGVVSYLNAGRGRESGDSNNDFLKFSHDLAPNSRSKGGGGGTGGKRVRQVTIEKKRRVDFTSKFDALRELIPNPTKNDRASLLCGAIEYIQELRRSVHNLTLLVNKKRSSCGKERIKRQKVEEEEEEQEEEALGDLESCNLKPLSEPDHHQRLLPINRCIIKSAWLQKKSEDTEVDVRIVDDDVTIKLVQRKNANCLLYASKALDELELDLQHVAGGHIGDFCSFLFNSKIYEGSSVCASAIANKLIEVMEAS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral246g00005 463 Gene3D - 252 318 IPR036638 GO:0046983
Pral246g00005 463 PANTHER TRANSCRIPTION FACTOR BHLH91 38 462 IPR045895 GO:0006355|GO:0048658
Pral246g00005 463 Coils Coil 321 343 - -
Pral246g00005 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 316 IPR036638 GO:0046983
Pral246g00005 463 Pfam Helix-loop-helix DNA-binding domain 255 303 IPR011598 GO:0046983
Pral246g00005 463 SMART finulus 260 309 IPR011598 GO:0046983
Pral246g00005 463 MobiDBLite consensus disorder prediction 324 344 - -
Pral246g00005 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 303 IPR011598 GO:0046983
Pral246g00005 463 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral246g00005 Pral-Chr246 72264 74151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral246g00005 251 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 49.289 5.44e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral246g00005 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral246g00005 - - pcin:129322575 574.318