LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral246g00003	ATGTCGGTGGCGTCACCGTCTCCGGCGGCAGCCACCGCCCCACCACCACCACCAACACCCTCGACCAATAGTAGTGCACCGCCGCCTGCCACCACTCCGCCACCACAATCGTCTTCACCCGCACCACCAGGCAATTCCCCTTCGCCGCCGCCTTCGGCACCTCCGCCATCATCAGCACCGCCTCCGGTGACTCCGTCTGCACCTCCTCCCACTGTCCGGTCGCCCCCGCCAGCACAGTCACCGCCACCTCAGGCATCGACACCCCCTCCGTCTGTCACTCCACCGCCATTGTCTCCTCCTCCACAATCTGTTGCCCCTGCGTCACGACCACCACCTCCGCCTAATGCTACGCCGCCTACTTCTCCTGTACGTTCCCCCTCACCACCACCACAGTCAACGTCTCCACCGGTGAGTTCTCCTCCGCCAGCAAATTCATCCCAATCACCGCCATCTAACCCATCTCCGGTGCCTTCGCCGTCTGCGCCTTCGGCAAATCCGCCAAGAAACTCACCTCCACCCCCGACACCATCGTCAGACCCTCCCCAAAACTCGCCCACGCCTCCTCCACCATCGTCCAACCCTCCGGTAAACTCATCTCGACCACCGACAGCAAGCCCCCCGGGGAATTCATCTTCACCGCCATCATCTGTGCCACCACCGAGTATTTCACCACCTCCGCCGGTGGCTGTGCCACCGCGAGGGTCATCTACACCACCAGCATCAGCACCGCCTGTAAATTTGCCCGCCCCTGAGGCGCCTCAGATGAGTACACCCACTTCTCAACCAAGTCCATCTCCTCCAAATTCCACCCCCAACTCATCTCCGCCGCCACCCATAATTCGGATGGCTCCACCTCCGTCCTCACTTTTGTCACCACCAGCTTCTCAAAATTCCTCCCCACCATCAGAAAGCGGAACAGAAAGTTCAAGCGCCGGTAAAAATGAGGGCATCAGTACGGGCGTTGCAGTGGCTATTGGTGTGGCAGGGATTATAGCGCTTACCTTAATTGGAATGCTTATCTGGTGCCTGATAAGGAGGCAAAAGAAACGGGGGCCTGAGAGTGGTGGTTATGTCATGCCATCCACTTCTGGTTCATTACCCGAGTCAGATTCATCCTTTTTTAAGACACACTCTTCAGCTCCTTTTGTACAAAGTGGTTCCGGTAGTGACTCTGTATACACACCATCTGAGCCGGGTGGACTAGGCAACTCAAGGACATGGTTTACATACGAAGAACTAATCAAAGCTACAAATAATTTTGCGCCTCAAAATCTTTTGGGTGAGGGTGGATTTGGTTCTGTATACAAAGGATGCCTACCAGATGGGAGAGAGGTAGCAGTCAAACAGCTGAAAGCCGGGGGAGGTCAGGGTGAAAGGGAATTCAAAGCTGAAGTGGAGATTATTAGTCGCATTCATCATCGCCATTTAGTCTCTTTGGTGGGATACTGCATTTTAGACAGCAGAAGGCTCCTCGTCTATGATTATGTCCCCAACAAAACCCTATATCATCATCTTCATGGGGAAGGTATGCCGGTGTTGAGCTGGGAAAGACGTGTGAAGATTGCTGCTGGTGCAGCTCGAGGAATTGCTTACCTTCATGAAGATTGTAATCCTCGGATCATTCACAGGGATATCAAGTCCTCAAACATTCTTTTAGATTACAACTTTGATGCTCAAGTCTCAGATTTTGGCCTAGCCAAATTAACTCTTGATACAGTTTCACACATAAGCACTCGTGTCATGGGAACATTTGGATATGTTGCACCTGAATATGCATCAAGTGGCAGATTGAGTGAGAAATCTGACGTATTCTCTTTTGGGGTTGTCCTTCTGGAGCTCATTACCGGACGAAAGCCTGTAGATGCATCTCAACCCTTGGGGGATGAGAGCCTAGTTGAATGGGCTCGACCTCTGCTGAGTCATGCAATTGATAATGAAGAATTTGAAGGTTTAACAGATCCTCGGCTTGAAAAAAACTATGTTGAAAGTGAGATGTTTCGCATGATTGAAATTGCTGCAACTTGTGTGCGACATTCGGCTGCCAAGAGACCTCGAATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAATAAATTCAGATTTGAACAACGGGATGAGGCCAGGGGAAAGCGAAGCATTTAACTCTGCACAGCAATCTGCAGAAATAAGAATGTTTCGGAGGATGGCATTTGGCAGCCAAGATTACAGCACAGACTTTTTTAGTCAGACAAGTTTGAATTCAACATAG	2247	0.514	MSVASPSPAAATAPPPPPTPSTNSSAPPPATTPPPQSSSPAPPGNSPSPPPSAPPPSSAPPPVTPSAPPPTVRSPPPAQSPPPQASTPPPSVTPPPLSPPPQSVAPASRPPPPPNATPPTSPVRSPSPPPQSTSPPVSSPPPANSSQSPPSNPSPVPSPSAPSANPPRNSPPPPTPSSDPPQNSPTPPPPSSNPPVNSSRPPTASPPGNSSSPPSSVPPPSISPPPPVAVPPRGSSTPPASAPPVNLPAPEAPQMSTPTSQPSPSPPNSTPNSSPPPPIIRMAPPPSSLLSPPASQNSSPPSESGTESSSAGKNEGISTGVAVAIGVAGIIALTLIGMLIWCLIRRQKKRGPESGGYVMPSTSGSLPESDSSFFKTHSSAPFVQSGSGSDSVYTPSEPGGLGNSRTWFTYEELIKATNNFAPQNLLGEGGFGSVYKGCLPDGREVAVKQLKAGGGQGEREFKAEVEIISRIHHRHLVSLVGYCILDSRRLLVYDYVPNKTLYHHLHGEGMPVLSWERRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNFDAQVSDFGLAKLTLDTVSHISTRVMGTFGYVAPEYASSGRLSEKSDVFSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHAIDNEEFEGLTDPRLEKNYVESEMFRMIEIAATCVRHSAAKRPRMGQVVRAFDSLINSDLNNGMRPGESEAFNSAQQSAEIRMFRRMAFGSQDYSTDFFSQTSLNST	748

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral246g00003	748	FunFam	Proline-rich receptor-like protein kinase PERK8	392	495	-	-
	Pral246g00003	748	CDD	STKc_IRAK	426	696	-	-
	Pral246g00003	748	SMART	serkin_6	420	697	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral246g00003	748	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	328	728	IPR047117	-
	Pral246g00003	748	MobiDBLite	consensus disorder prediction	9	291	-	-
	Pral246g00003	748	Gene3D	Phosphorylase Kinase; domain 1	397	495	-	-
	Pral246g00003	748	ProSitePatterns	Protein kinases ATP-binding region signature.	426	448	IPR017441	GO:0005524
	Pral246g00003	748	SUPERFAMILY	Protein kinase-like (PK-like)	398	691	IPR011009	-
	Pral246g00003	748	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	540	552	IPR008271	GO:0004672\|GO:0006468
	Pral246g00003	748	ProSiteProfiles	Protein kinase domain profile.	420	697	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral246g00003	748	MobiDBLite	consensus disorder prediction	292	313	-	-
	Pral246g00003	748	MobiDBLite	consensus disorder prediction	1	313	-	-
	Pral246g00003	748	Pfam	Protein tyrosine and serine/threonine kinase	424	692	IPR001245	GO:0004672\|GO:0006468
	Pral246g00003	748	Gene3D	Transferase(Phosphotransferase) domain 1	496	714	-	-
	Pral246g00003	748	PRINTS	Proline rich extensin signature	27	43	-	-
	Pral246g00003	748	PRINTS	Proline rich extensin signature	56	81	-	-
	Pral246g00003	748	PRINTS	Proline rich extensin signature	6	27	-	-
	Pral246g00003	748	MobiDBLite	consensus disorder prediction	351	371	-	-
	Pral246g00003	748	FunFam	proline-rich receptor-like protein kinase PERK8	496	707	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral246g00003	Pral-Chr246	35239	40768	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral246g00003	321	635	Trihelix Transcription Factor Family	AT1G26150	70.253	8.89e-160	476

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Pral246g00003		PK_Tyr_Ser-Thr	2.3e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral246g00003	-		-	gmx:100794393	719.539