Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2469g00001 ATGGGTTTTAGCGATGCTTCCAGCAGCCCGGGCCTTCGCCTTGTTCTGGGGTTAGGTATGACTGGTTCTCCATCCCGGGCTGACCGTAGTAGCAGGCCGACCAAGAGCTCCAGCGATTTCACGCCAACAAGTAGTTGCGAGCCATCTTTAACCCTGGCTCTTTCCGCCGAGACTTACCAGCGAACCCCGAAAAAGGTTGACGTGAACAAAAGTTGTGAGGATCCTCTTGACTTTTCTCGCCAAACATCACCTCACAGTGCCGTCTCATCCTTCTCCGGCCGGAGATCGAAGAGGGAGAGAGATCTCAGCAGTGAAGACGTCGAGGCAGCGGAGAGGGTTTCCTCCAGAGGGAGCGACGAAGACGAAGACGGAACCAATGCCAGAAAGAAGCTCAGGCTCACCAAAGAACAATCTGCCTTGCTAGAGGAAAGCTTCAAACAAAATAGCACTCTAAATCCTAAGCAGAAGCAGGCATTATCCAGGCAGCTAAATCTGAGGCCGAGACAAGTTGAGGTGTGGTTCCAAAATCGGAGAGCCAGGACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTCTTAAAGAAATGCTGTGAGACGCTGACGGATGCAAACAGGAAGCTGCAGAAGGAGGTGCAGGAGCTGAAGGCGCTGAAGCTGGCCCAACCTCTGTATATGGCGATGCCGGCAGCCACGCTCACGATGTGCCCGTCCTGCGAGAGGATGGGGAGGGTCGCCGGCGACGGCGCTTCTAATGACAAGACCGCCTTCTCAATGGCACCCAAACCTCATTTCTACACGCCCTTCCCCAATCCTTCGGCGGCATGCTGA 828 0.5471 MGFSDASSSPGLRLVLGLGMTGSPSRADRSSRPTKSSSDFTPTSSCEPSLTLALSAETYQRTPKKVDVNKSCEDPLDFSRQTSPHSAVSSFSGRRSKRERDLSSEDVEAAERVSSRGSDEDEDGTNARKKLRLTKEQSALLEESFKQNSTLNPKQKQALSRQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDANRKLQKEVQELKALKLAQPLYMAMPAATLTMCPSCERMGRVAGDGASNDKTAFSMAPKPHFYTPFPNPSAAC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2469g00001 275 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Pral2469g00001 275 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Pral2469g00001 275 MobiDBLite consensus disorder prediction 1 128 - -
Pral2469g00001 275 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Pral2469g00001 275 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Pral2469g00001 275 Gene3D - 121 189 - -
Pral2469g00001 275 SMART HOX_1 126 188 IPR001356 GO:0003677
Pral2469g00001 275 MobiDBLite consensus disorder prediction 24 58 - -
Pral2469g00001 275 MobiDBLite consensus disorder prediction 75 91 - -
Pral2469g00001 275 Coils Coil 197 220 - -
Pral2469g00001 275 CDD homeodomain 128 185 IPR001356 GO:0003677
Pral2469g00001 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 254 - -
Pral2469g00001 275 FunFam Homeobox-leucine zipper protein 18 111 189 - -
Pral2469g00001 275 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Pral2469g00001 275 MobiDBLite consensus disorder prediction 92 128 - -
Pral2469g00001 275 SUPERFAMILY Homeodomain-like 117 185 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2469g00001 Pral-Chr2469 1357 2833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2469g00001 1 275 Homeobox Transcription Factor Family AT4G37790 58.824 4.02e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral2469g00001 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2469g00001 K09338 - jre:109019457 378.637