LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2459g00008	ATGAGTAGCAATGGCCAATCTTCCGGTAACAGCTATAACATCAGAGACTTAATCTGCAACGCCGGCGCTGGTGCCTCAGCTGGGGCAATAGCGGCCACATTTGTGTGCCCATTGGATGTCATCAAGACTAGACTACAAGTTCATGGTCTTCCCCCTGGGCAGACAGGCAGTGTTATCATCACAAGTTTGCAGAATATAGCCAGGACTGAAGGTTTCAGGGGGCTGTATCGTGGACTTTCACCAACAATACTAGCATTACTTCCAAATTGGGCGGTTTACTTCACAGTTTATGAGCAACTAAAAGGCCTGCTTCGTTCACGTGATGGTTGCCACCAACTCACAACTAGTGAAAATATGATAGCTGCTGCCGGTGCTGGAGCAGCCACAGCAATTTCAACAAATCCATTGTGGGTTGTTAAGACCAGACTTCAAACACAGGGAATGAGGCCAAATGTCGTTCCTTACAAGAGTGTTCTTTCTGCTCTGACAAGGATTACTTGTGAGGAAGGCATGCGAGGATTGTACAGTGGCATCTTGCCTTCATTGGCCGGCATAAGTCATGTTGTAATACAATTCCCATCGTATGAAAAGATTAAGTCATACATGGCAAAAAAGGGTAAATATGAAAACACTACAGTTGACAAGCTAAGTCCGGGAAATGTTGCCATTGCATCTTCAATTTCCAAAGTAATTGCCTCTGTAATGACTTATCCTCATGAGGTGATACGATCCAGGCTACAGGAGCAAGGACAGGCCAAAAATATCAAGGTCCAGTATGCAGGGGTTGTTGATTGTGCTAAGAAGGTGTTCCAGAAGGACGGCTTTCCAGGCTTTTATCGGGGTTGTGCTACCAATCTGTTGAGAACAACTCCATCGGCTGTCATCACATTCACCAGTTATGAAATGATATACAGATTCTTCCATCGTTTTGTTCCTCAGGACAATGTACATCCACAAGGCTATCCTAAATCTACTGATATTAACAAGCCCAAGCCGGAAGACAGTGATGACATGAAGTTTGAAAAAGGCCCTATGGTATGA	1041	0.4467	MSSNGQSSGNSYNIRDLICNAGAGASAGAIAATFVCPLDVIKTRLQVHGLPPGQTGSVIITSLQNIARTEGFRGLYRGLSPTILALLPNWAVYFTVYEQLKGLLRSRDGCHQLTTSENMIAAAGAGAATAISTNPLWVVKTRLQTQGMRPNVVPYKSVLSALTRITCEEGMRGLYSGILPSLAGISHVVIQFPSYEKIKSYMAKKGKYENTTVDKLSPGNVAIASSISKVIASVMTYPHEVIRSRLQEQGQAKNIKVQYAGVVDCAKKVFQKDGFPGFYRGCATNLLRTTPSAVITFTSYEMIYRFFHRFVPQDNVHPQGYPKSTDINKPKPEDSDDMKFEKGPMV	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2459g00008	346	MobiDBLite	consensus disorder prediction	327	346	-	-
	Pral2459g00008	346	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	307	-	-
	Pral2459g00008	346	Gene3D	Mitochondrial carrier domain	112	315	IPR023395	-
	Pral2459g00008	346	Gene3D	Mitochondrial carrier domain	3	111	IPR023395	-
	Pral2459g00008	346	MobiDBLite	consensus disorder prediction	318	346	-	-
	Pral2459g00008	346	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Pral2459g00008	346	Pfam	Mitochondrial carrier protein	20	105	IPR018108	-
	Pral2459g00008	346	Pfam	Mitochondrial carrier protein	216	308	IPR018108	-
	Pral2459g00008	346	Pfam	Mitochondrial carrier protein	113	205	IPR018108	-
	Pral2459g00008	346	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	216	306	IPR018108	-
	Pral2459g00008	346	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Pral2459g00008	346	SUPERFAMILY	Mitochondrial carrier	16	302	IPR023395	-
	Pral2459g00008	346	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	16	312	IPR044712	GO:0006862\|GO:0055085
	Pral2459g00008	346	PRINTS	Mitochondrial carrier protein signature	225	247	IPR002067	GO:0055085
	Pral2459g00008	346	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Pral2459g00008	346	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Pral2459g00008	346	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Pral2459g00008	346	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2459g00008	Pral-Chr2459	49642	55470	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2459g00008	1	336	Chloroplast and Mitochondria Gene Families	AT1G25380	66.087	5.85e-146	415

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2459g00008	K15115		-	gmx:100816376	528.865