Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2458g00006 ATGGATCAACGGCTTAAGCATCCACTGATTCAGTCATCAGAAAGCCTAGGGGAGAATTCTTCTTCTCTGCATTCTGCAGATTTTCCAGAAATGAGAAAGAAAGCAGTTGGATTGAAAAGGAAGAGAAACAATAGCAGGATTGAAGAGAAACAGAAAGAAGTAATCCATGTAAGGGCAAAAAGAGGTCAAGCTACTGATAGCCACAGTTTAGCAGAACGGGTGAGAAGAGAGAGAATCAACGAGAAGCTGAGATATTTGCAGGACCTGGTTCCAGGCTGCTACAAGGCAATGGGAATGGCAGTTATGTTAGACGTGATCATAAACTATGTTCTATCGCTACAGCAACAGATTGAGTTCCTTTCCATGAAGCTCTCAGCAGCAAGCATGCATTTTGATTTCAACACCTACCAGATAGATACCCTCCAAACTATGCAGAGAAGTACTAGCACAGATGGAATCCAAGGGATGGAAAGGACTGAACAAGAAGGTTATGGAAGTTTTGCTTATTGGAATCCTACATGGCCACTTCAATAG 534 0.4232 MDQRLKHPLIQSSESLGENSSSLHSADFPEMRKKAVGLKRKRNNSRIEEKQKEVIHVRAKRGQATDSHSLAERVRRERINEKLRYLQDLVPGCYKAMGMAVMLDVIINYVLSLQQQIEFLSMKLSAASMHFDFNTYQIDTLQTMQRSTSTDGIQGMERTEQEGYGSFAYWNPTWPLQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2458g00006 177 Gene3D - 59 133 IPR036638 GO:0046983
Pral2458g00006 177 SMART finulus 69 119 IPR011598 GO:0046983
Pral2458g00006 177 Pfam Helix-loop-helix DNA-binding domain 67 91 IPR011598 GO:0046983
Pral2458g00006 177 MobiDBLite consensus disorder prediction 8 26 - -
Pral2458g00006 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 132 IPR036638 GO:0046983
Pral2458g00006 177 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 147 IPR024097 GO:0006355
Pral2458g00006 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 113 IPR011598 GO:0046983
Pral2458g00006 177 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2458g00006 Pral-Chr2458 70117 71372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2458g00006 49 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 66.102 3.78e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2458g00006 HLH 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2458g00006 - - pcin:129300422 290.812