Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2457g00002 ATGTCTTTTGCAGATAATAGGGAACAAGAGAGGGAAATCCGGTCCAGTTGTTCAGATAATTCTGATAAACTCATGGACAAGCATTCTAATTCAAATCGTCCTTCAATGACAAGAGGCAAGGAGAAGCGTGTTACTGCTACTGGTCATGAGATGGATACTATTCACAGGGACAGGCGTAAGAAAATCAAAACCTTGTTTGATAGCCTTCAAGCTATGCTCCCTCATGTGCCCAAGAAGACTGACAAAGTGACAGTAGTTGATGAAACATTGAACTACATAAGAAATTTGGAGGAAACTTTGAAAGATCTGGAAAAGAAGAAAAAGGAACGACTTCAATCTTCTGTGGGCTCTAATGTGGGTAATCCCAGTGGAACTTCAAGAGAGGCTTTCATAGCTGAACAAGTAGCTTCCTCCTCACCCACCCCAAGTCCTCCAAGTCCTCATAATAATAACTCAGTAGGGTTCCAAACTTGGACTTCTCCGAATGTGGTTGTCAACATTTGTGGCCAAGACGCACAATTCAGTGTTTGCTCTTACAAGAACCGCTGCCTCTTCAGCAGCATCTGCTGTGTTCTCGAGAAGTATAAGATTGAGGTTTTGTCTTCTCACATTTCATGTGACAATAGTCGCAGGTTCTATATGTTTCAAGCACAGGTGAACAGAGATTCGGTTCAGCTTCCAGGGGCATTCTCAGCAGAAGAAACATTCAAGCAAGTTGCTGAAGAAATTATTCGGTGTCTCTCCTGA 747 0.4257 MSFADNREQEREIRSSCSDNSDKLMDKHSNSNRPSMTRGKEKRVTATGHEMDTIHRDRRKKIKTLFDSLQAMLPHVPKKTDKVTVVDETLNYIRNLEETLKDLEKKKKERLQSSVGSNVGNPSGTSREAFIAEQVASSSPTPSPPSPHNNNSVGFQTWTSPNVVVNICGQDAQFSVCSYKNRCLFSSICCVLEKYKIEVLSSHISCDNSRRFYMFQAQVNRDSVQLPGAFSAEETFKQVAEEIIRCLS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2457g00002 248 Gene3D - 49 118 IPR036638 GO:0046983
Pral2457g00002 248 Pfam Helix-loop-helix DNA-binding domain 56 97 IPR011598 GO:0046983
Pral2457g00002 248 Coils Coil 86 113 - -
Pral2457g00002 248 MobiDBLite consensus disorder prediction 1 54 - -
Pral2457g00002 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 106 IPR036638 GO:0046983
Pral2457g00002 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Pral2457g00002 248 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 30 246 IPR044278 GO:0003700|GO:0006355|GO:0009960
Pral2457g00002 248 SMART finulus 54 102 IPR011598 GO:0046983
Pral2457g00002 248 MobiDBLite consensus disorder prediction 133 154 - -
Pral2457g00002 248 MobiDBLite consensus disorder prediction 106 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2457g00002 Pral-Chr2457 5310 6547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2457g00002 56 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.526 1.92e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2457g00002 HLH 8.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2457g00002 - - pcin:129293085 281.567