Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral2457g00002 | ATGTCTTTTGCAGATAATAGGGAACAAGAGAGGGAAATCCGGTCCAGTTGTTCAGATAATTCTGATAAACTCATGGACAAGCATTCTAATTCAAATCGTCCTTCAATGACAAGAGGCAAGGAGAAGCGTGTTACTGCTACTGGTCATGAGATGGATACTATTCACAGGGACAGGCGTAAGAAAATCAAAACCTTGTTTGATAGCCTTCAAGCTATGCTCCCTCATGTGCCCAAGAAGACTGACAAAGTGACAGTAGTTGATGAAACATTGAACTACATAAGAAATTTGGAGGAAACTTTGAAAGATCTGGAAAAGAAGAAAAAGGAACGACTTCAATCTTCTGTGGGCTCTAATGTGGGTAATCCCAGTGGAACTTCAAGAGAGGCTTTCATAGCTGAACAAGTAGCTTCCTCCTCACCCACCCCAAGTCCTCCAAGTCCTCATAATAATAACTCAGTAGGGTTCCAAACTTGGACTTCTCCGAATGTGGTTGTCAACATTTGTGGCCAAGACGCACAATTCAGTGTTTGCTCTTACAAGAACCGCTGCCTCTTCAGCAGCATCTGCTGTGTTCTCGAGAAGTATAAGATTGAGGTTTTGTCTTCTCACATTTCATGTGACAATAGTCGCAGGTTCTATATGTTTCAAGCACAGGTGAACAGAGATTCGGTTCAGCTTCCAGGGGCATTCTCAGCAGAAGAAACATTCAAGCAAGTTGCTGAAGAAATTATTCGGTGTCTCTCCTGA | 747 | 0.4257 | MSFADNREQEREIRSSCSDNSDKLMDKHSNSNRPSMTRGKEKRVTATGHEMDTIHRDRRKKIKTLFDSLQAMLPHVPKKTDKVTVVDETLNYIRNLEETLKDLEKKKKERLQSSVGSNVGNPSGTSREAFIAEQVASSSPTPSPPSPHNNNSVGFQTWTSPNVVVNICGQDAQFSVCSYKNRCLFSSICCVLEKYKIEVLSSHISCDNSRRFYMFQAQVNRDSVQLPGAFSAEETFKQVAEEIIRCLS | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral2457g00002 | 248 | Gene3D | - | 49 | 118 | IPR036638 | GO:0046983 | |
Pral2457g00002 | 248 | Pfam | Helix-loop-helix DNA-binding domain | 56 | 97 | IPR011598 | GO:0046983 | |
Pral2457g00002 | 248 | Coils | Coil | 86 | 113 | - | - | |
Pral2457g00002 | 248 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Pral2457g00002 | 248 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 56 | 106 | IPR036638 | GO:0046983 | |
Pral2457g00002 | 248 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 46 | 96 | IPR011598 | GO:0046983 | |
Pral2457g00002 | 248 | PANTHER | BHLH DOMAIN-CONTAINING PROTEIN | 30 | 246 | IPR044278 | GO:0003700|GO:0006355|GO:0009960 | |
Pral2457g00002 | 248 | SMART | finulus | 54 | 102 | IPR011598 | GO:0046983 | |
Pral2457g00002 | 248 | MobiDBLite | consensus disorder prediction | 133 | 154 | - | - | |
Pral2457g00002 | 248 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral2457g00002 | Pral-Chr2457 | 5310 | 6547 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral2457g00002 | 56 | 248 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G49770 | 35.526 | 1.92e-35 | 126 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pral2457g00002 | HLH | 8.7e-08 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral2457g00002 | - | - | pcin:129293085 | 281.567 |