Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2457g00001 ATGTCTGCTAATCTCTCAAACTCAGATAACACTACTGGGGAAATCAGTAGTGTGCAAAGACCCTTGAGACAGAAGAGAGATATCAGCAAGGTTGATGGAGAAAATCATCATACCTCATTAGAGAGAGAAAGAAGGAAGAAGATAAGGTTGCATCTGAGAGAACTTCAAGATTTGGTCCCTTCTGTTCATCACATTAGGGCAGACCAGGCAACCATTGTTGAAGAAACTATTAAGTACATTAAAACCCTAGAAGATGTTGTTGAGAAGTTGGAGAAAATAAAGAGAGAGAGACTCCAATCTGCCTCCAATAATAATTCTGCTTATCCCACAGCCAGCCAAGGACCTCCCTCCATGGCCACTGCTCATCAACTCACATCAGTTCCACAAAACCCCATAGGGTTTCAAACTTGGGTTTTTCCAAATGTGGTAGTGAACATTTGTGGGGAAGAAGGTCAGTTCAGAATGTGCTATCCCAACAAGCCAGACCTCTACGGCGACATCGTTTGTGTTCTTCACAAGTATAACATTCAGGTTTTGTGTGTCACCATCTCAACTGATGATTATAAAACCTCGTACAAGATTCAAGCACGTGCAAATAAGCAGAATTCGGATCAATTTCAGAGGCATTTTCAGTGGAGGAAGCATTCAAGAAAGCGGCAAGAGAC 665 0.4211 MSANLSNSDNTTGEISSVQRPLRQKRDISKVDGENHHTSLERERRKKIRLHLRELQDLVPSVHHIRADQATIVEETIKYIKTLEDVVEKLEKIKRERLQSASNNNSAYPTASQGPPSMATAHQLTSVPQNPIGFQTWVFPNVVVNICGEEGQFRMCYPNKPDLYGDIVCVLHKYNIQVLCVTISTDDYKTSYKIQARANKQNSDQFQRHFQWRKHSRKRQET 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2457g00001 222 MobiDBLite consensus disorder prediction 99 119 - -
Pral2457g00001 222 Gene3D - 25 100 IPR036638 GO:0046983
Pral2457g00001 222 MobiDBLite consensus disorder prediction 1 43 - -
Pral2457g00001 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 83 IPR011598 GO:0046983
Pral2457g00001 222 MobiDBLite consensus disorder prediction 20 43 - -
Pral2457g00001 222 MobiDBLite consensus disorder prediction 98 119 - -
Pral2457g00001 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 101 IPR036638 GO:0046983
Pral2457g00001 222 Pfam Helix-loop-helix DNA-binding domain 36 84 IPR011598 GO:0046983
Pral2457g00001 222 CDD bHLH_AtbHLH_like 37 91 IPR045239 -
Pral2457g00001 222 SMART finulus 38 89 IPR011598 GO:0046983
Pral2457g00001 222 MobiDBLite consensus disorder prediction 1 19 - -
Pral2457g00001 222 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 16 207 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2457g00001 Pral-Chr2457 1424 2315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2457g00001 37 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 31.754 1.52e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2457g00001 HLH 5.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2457g00001 - - pcin:129293081 228.409