Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2456g00078 ATGATTATGCAGCCCAGTAGCAGCGAAATGCAACAGGGAATCAACTCTTCCTCCTCCTCCTCCATGAATTCTTCTCAAATTCCCCTTCATGACCAGATCCAACAACCTGACCTTCATGACGATTTTCTCGACCAAATGCTCTCCAACCTTCCTTCTTGCTCCTGGCCTGACCTCAACCCGAAGCCCTTCTGGGACCACCAGCTCAATCCCTCCGATGACAACCACAATAATGCCACGTTCCCCTACGAAGACAAGTTTCGCAACCTCCAGATCCCTTCCGCCTCCACTCCGCCTCCTAAGTCCGCCGCCGCCGAGGCCGTCGCCTTGATGCTTCAGCGCCAGCTTCTCATGTCCAGAGGTGTTGCCGGTGGAGGCGCCGCCGACTCTGGCCTGCTCCAGATGCCCTTGTCTCTCGGCGGAGGAGGAAACTTCGAGCCTTCCCGTAACGACGTGGTTGACGGTTCCTCCTTCAAATCTCACGTTCCGGCCGGCGACGGTAACGTCCAATCTCTGTACAACGGATTCGCCGGATCTATGCACGACGCTCATCAAGCTTCCAACCAAACTCAACATTTCCATCATCCTCAGGGGCAGAATTATGGACCTTCAGGAGCGCCAGCGGCGAACCAGGCCCCGCAGAACGGAGCTCCGGCGCAGCCAAAGCAGAGGGTTAGGGCGAGGAGGGGTCAAGCGACGGACCCACACAGCATCGCTGAGAGGTTACGAAGGGAGAGAATCGCAGAGAGAATGAAGGCCCTGCAGGAACTGGTTCCCAATGCCAACAAGACAGATAAGGCTTCAATGCTGGACGAGATAATAGATTATGTCAAGTTCTTGCAGCTCCAAGTGAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCTGCCGCTGTTGCTCCTCTTGTTGCTGATATATCCTCTGAGGGAGGAGGTGACTGCATCCAAGCCACCGCCGCACGCAACAACTCCAACTCCAACGGCAACCAAACGGCGTCGTCCTCCAACGACACCTTGGCCATGACGGAGCACCAGGTGGCCAAGCTCATGGAGGAAGACATGGGCTCCGCCATGCAGTATCTTCAGGGGAAAGGTCTCTGCCTCATGCCCATCTCCCTCGCTACGGCCATCTCCACCGCCACCTGTCCCTCGCGGAACCCCTTGGCCCCGGCCGCCGCCGCCAACCAGCACCCGGGCTTGGCGTCCAACGGCAACGGAGGGGAAGGGCCGTCTTCTCCCAGCATGTCAGTGTTGACCGTCCAATCCGCCACCGCAGTTAACGACGGCGCCGTTAAAGACGCCGCCTCCGTTTCGAAGCCGTGA 1317 0.5809 MIMQPSSSEMQQGINSSSSSSMNSSQIPLHDQIQQPDLHDDFLDQMLSNLPSCSWPDLNPKPFWDHQLNPSDDNHNNATFPYEDKFRNLQIPSASTPPPKSAAAEAVALMLQRQLLMSRGVAGGGAADSGLLQMPLSLGGGGNFEPSRNDVVDGSSFKSHVPAGDGNVQSLYNGFAGSMHDAHQASNQTQHFHHPQGQNYGPSGAPAANQAPQNGAPAQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGGDCIQATAARNNSNSNGNQTASSSNDTLAMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCPSRNPLAPAAAANQHPGLASNGNGGEGPSSPSMSVLTVQSATAVNDGAVKDAASVSKP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2456g00078 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Pral2456g00078 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 375 - -
Pral2456g00078 438 Pfam Helix-loop-helix DNA-binding domain 235 280 IPR011598 GO:0046983
Pral2456g00078 438 SMART finulus 236 285 IPR011598 GO:0046983
Pral2456g00078 438 MobiDBLite consensus disorder prediction 183 217 - -
Pral2456g00078 438 MobiDBLite consensus disorder prediction 183 235 - -
Pral2456g00078 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 290 IPR036638 GO:0046983
Pral2456g00078 438 FunFam Transcription factor bHLH66 227 292 - -
Pral2456g00078 438 Gene3D - 225 287 IPR036638 GO:0046983
Pral2456g00078 438 MobiDBLite consensus disorder prediction 1 30 - -
Pral2456g00078 438 MobiDBLite consensus disorder prediction 387 416 - -
Pral2456g00078 438 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2456g00078 Pral-Chr2456 315334 318515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2456g00078 216 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 64.854 3.98e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2456g00078 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2456g00078 - - cave:132185902 481.485