Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2456g00073 ATGGAAGAGAACATATCAAGCAAGGAATCAAGTGGTGTGGACAATGTGAGCACAGAAGGTTTGGATTCAAACGGCAATTGTTATCCCGCCTATCCAAACAAACATTTAGGACATTGCAGCAAGGAATCCGATAATAAATTCAAGGGCATTATGCCTCCGCAGATTGGGAGCTGGGGTTCTCAGGTATATGCTAATGGCCATCAGATTTGGCTTGGGACCTTCACGTCTGAAAAGAAACCAGAGATGGCTTATGACAGTGTGACTATCCAACTTTGCTGTGGTGATTCTCACCAGAATTTTCCTCAGACTAATGTCATTGTTAAGGAGCCAAACTTCCAGAACCAATACTTCCGAGAAGCTGCACCTGAGATGATAAGAGGTGGTTCATGCCAACCAAGATTCCGAGGACTTGATGGGGATAATTGTGGAAACACTGAATCAGGTACTTGTGGTCTCAACCATTTTGCAATGCAGAAAAGAGGTTGCTTCTCATGTAAGCTACTTTTCCGAAAGATGCTGACACCAAGCGATGTGGGTAGGTTGAATAGAATTGTAATCCCCAAGAAATACGCCACCACATGTTTCTCTGATATCTCTAGAAAAATGGAAGAAGATGCAAAATCCAGTGAGCTTGCCGATGTGCAGGTAGATTTCTTTGACAGAATGATGAGGTCTTGGAAGTTCCGGTACTGCTATTGGAAGAGCAGCCAGAGTTATGTGTTCACAAGGGGTTGGAGCAGGTTTGTGAAGGACAAGCAGTTGAAGGTTAATGAAGTTGTTGCCTTTTACTTGTGTGAAGTCCAAGGGGAAGGAAAAATAGTGAACAAGTTCTTCATGATTGACCCTGTGAGAGGTGAAGACTCTTCTGGTAGTAGCAGCGGCTCAGTGATTGAAGTTGCTGATCACAATTTTTGGTTGAATCAACCTGAAATGTTCTCCTCAGTATTTGAAAGTGCTTCTTATCACCATGTTGAGTTGACGAAACCTGAACTGTGCTCTGATGTTGAGAAGAGGCTTGGAAAGCAAGTGGTGGATGCTGACCCACCGAGCAATGTTGAGAGGAAAGGTTTTAGACTCTTTGGGGTCCAAATCGACTGA 1098 0.4372 MEENISSKESSGVDNVSTEGLDSNGNCYPAYPNKHLGHCSKESDNKFKGIMPPQIGSWGSQVYANGHQIWLGTFTSEKKPEMAYDSVTIQLCCGDSHQNFPQTNVIVKEPNFQNQYFREAAPEMIRGGSCQPRFRGLDGDNCGNTESGTCGLNHFAMQKRGCFSCKLLFRKMLTPSDVGRLNRIVIPKKYATTCFSDISRKMEEDAKSSELADVQVDFFDRMMRSWKFRYCYWKSSQSYVFTRGWSRFVKDKQLKVNEVVAFYLCEVQGEGKIVNKFFMIDPVRGEDSSGSSSGSVIEVADHNFWLNQPEMFSSVFESASYHHVELTKPELCSDVEKRLGKQVVDADPPSNVERKGFRLFGVQID 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2456g00073 365 SUPERFAMILY DNA-binding pseudobarrel domain 167 266 IPR015300 -
Pral2456g00073 365 Gene3D - 160 283 IPR015300 -
Pral2456g00073 365 ProSiteProfiles AP2/ERF domain profile. 46 101 IPR001471 GO:0003700|GO:0006355
Pral2456g00073 365 SMART B3_2 169 281 IPR003340 GO:0003677
Pral2456g00073 365 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 364 IPR044800 GO:0003700
Pral2456g00073 365 SMART rav1_2 46 107 IPR001471 GO:0003700|GO:0006355
Pral2456g00073 365 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Pral2456g00073 365 ProSiteProfiles B3 DNA-binding domain profile. 169 281 IPR003340 GO:0003677
Pral2456g00073 365 Pfam B3 DNA binding domain 169 274 IPR003340 GO:0003677
Pral2456g00073 365 SUPERFAMILY DNA-binding domain 46 102 IPR016177 GO:0003677
Pral2456g00073 365 CDD B3_DNA 168 264 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2456g00073 Pral-Chr2456 295822 303804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2456g00073 46 365 RAV Transcription Factor Family AT1G50680 40.950 2.45e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2456g00073 B3 1.3e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2456g00073 K09287 - cave:132185862 301.597