Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2456g00058 ATGGGCTTTGGGGCATTTGGTTCCATAGTACTTCTGACGTTTTTCTTTGAGCATTTGGCTTGCCAGCAACCAAATACTGATGGTTTCTTTGTGTCTGAGTTCTTGAAGAACATGAGTTTAGCAGCATCACCTTCCTCACAAGCCTTCAACTTCTCTGCTTCTGTTTGTTCATGGCCAGGCGTTTCCTGCGATGCAAATAAAGAACATGTTGTTGAGTTGAAAACTTCTGGTATGACACTCTCTGGGCCTATTCCTGATGACACCATTGGCAAGCTCAGCAAGCTACAAATTTTGGATCTTAGTAGCAACAAAATCACTGCTTTACCTTCTGATTTCTGGAGCTTAGGCTCTTTGAAGATTCTTAACCTCTCCTCCAATAAGATATCAGGTTCACTTGCCAGCAACTTTGGCAACTTTGGTCTCCTCGAAACCTTTGACTTGTCCAGCAACCATTTTTCTGGGGAAATTCCTGAAGCTATTAGCTCCCTTGTGAGTTTAAGGATCCTCAAACTTGACAAAAACAAGTTTGAGCAGAGCATACCTTCTGGGATTCTACAGTGTCGGTCTTTAGTTTCTATTGATCTTTCACTAAATCAGCTTAATGGCACTCTTCCTGAAGGTTTTGGAGCTGCTTTTCCAAAACTTGAAAGCTTGAACCTTGCAGGGAATAATCTTCGTGGTCATGATTCAGATTTTTCAGGATTGAAATCCATTTCTAGTATTAACATATCCGCAAATTCCTTTCAGGGTTCTTTTTTGGGCATGTTTCAGGAACGGTTGGAGGTAATTGACCTTAGCAGGAACCAGTTTGAGGGTCAGATTTCTCAGGTAAAGTTCAAGTACAATTGGTCTCATTTGATTTATCTGGATTTGTCTGAGAATAGGCTTAGTGGGGAAATTTTCCAGTATCTGAATGAAGCCCAGAATCTTAAACACCTGAATCTGGCTCACAATAGGTTTACAAGTCAGAAATTTCCGCAAATTGAAAACCTCTCAAGATTGGAATATCTGAACTTGTCCAAAGCTAATCTGCATGGCCACATTCCTGCTGAAATATCACGGCTGAGTAATTTGACTTCACTTGATATTTCGTTGAATTATCTTACTGGGGCAATTCCGTTTCTAAGAAGTGAAAACCTCCAAGTTCTTGACCTTTCATACAACAATTTGAGTGGAGAAATCCCTCAAACTGTGTTGGAGAAACTCCCATCAATGGAGAAATACAACTTCTCTTATAATAACTTAACCTTCTGTTCTTTGGGAATCAACCCCAGTATCCTGCAAACAGCATTCTATGGATCATCAGACAATTGCCCAATTGCTGCAAATCCGAAGCTTTTCAAAAGAACCAATGAACGCAGGGGAATGAAGTTAGCTCTGGCATTGACCCTCTCAATGGTCTGCTTGCTTTCTGGTCTTCTATTTCTAGCGTTTGGTTGCAGAAGGAAAACAAAATCATGGGCGACTAAGCAAACTTCCTACAAAGAAGAGCAGAACATTTCAGGTCCCTTCTCGTTCCAGACTGATTCAACTACCTGGGTGGCTGATGTCAAGCAAGCAAACTCAGTCCCAGTAGTAATATTTGAGAAGCCATTACTCAACATTACATTTGCGGATCTCTTGTACTCAACTTCAAATTTTGATCGGGGTACCCTCTTGGCTGAAGGCAAGTTCGGGCCTGTTTACCGAGGTTTTCTGCCCAGTGGCATTCATGTGGCAGTTAAAGTTTTGGTTGTTGGGTCTACATTGACGGATCAAGAAGCTGCTAAGGAGCTTGAGTATCTCGGTCGAATCAAGCACCCCAATCTTGTTCCCCTAACTGGATATTGCTTTGCTGGGGATCAAAGAATTATCATATATGATTACATGGAGAATGGGAACTTGCAAAACTTTCTTCATGACTTGCCACTTGGGGTACAGAGGACTGATGATTGGAGCACAGACACATGGGAAGAAGGAGATGACATGAATGGAATTCACAATGCCAGCTCTGAGGGATTGTCACTCTCATCCTGGCGGTTTCGACACAAAATTGCCCTTGGTACTGCTCGAGCATTGGCATTTCTTCACCATGGCTGCTACCCTCCAATTATTCACAGGGACGTTAAAGCTAGCAGTGTCTACTTGGACTATAACTTGGAACCAAGGTTGTCAGATTTTGGGCTGGCCAAGATTTTTGGAAGCAGCTTGAATGAGGAGATGGCTCGAAGCTCTCCCGGCTATGTTCCACCTGAGTTTTGTCAACCTGAAGATGACCTCCCAACACCAAAATCTGATGTTTACTGTTATGGGGTTGTTCTCTTTGAGCTAATAACAGGCAAAAAACCAGTTGGAGATGATTATCCTGAGGAGAAAGAGGGGACTTTGGTGAGTTGGGTCAGAGCACTAGTAAGAAAGAACCTAGCTTCAAGAGCTATTGATCCAAAAATTAATGATAGAGGAATTGATGATCAAATTGAAGAAGCCCTTAAGATTGGTTATCTCTGTACTGCTGATCTTCCCTCTAAGCGACCTAGCATGCAGCAGATAGTGGGACTTTTGAAAGATATTGAGCCTGCTGCTTAG 2565 0.423 MGFGAFGSIVLLTFFFEHLACQQPNTDGFFVSEFLKNMSLAASPSSQAFNFSASVCSWPGVSCDANKEHVVELKTSGMTLSGPIPDDTIGKLSKLQILDLSSNKITALPSDFWSLGSLKILNLSSNKISGSLASNFGNFGLLETFDLSSNHFSGEIPEAISSLVSLRILKLDKNKFEQSIPSGILQCRSLVSIDLSLNQLNGTLPEGFGAAFPKLESLNLAGNNLRGHDSDFSGLKSISSINISANSFQGSFLGMFQERLEVIDLSRNQFEGQISQVKFKYNWSHLIYLDLSENRLSGEIFQYLNEAQNLKHLNLAHNRFTSQKFPQIENLSRLEYLNLSKANLHGHIPAEISRLSNLTSLDISLNYLTGAIPFLRSENLQVLDLSYNNLSGEIPQTVLEKLPSMEKYNFSYNNLTFCSLGINPSILQTAFYGSSDNCPIAANPKLFKRTNERRGMKLALALTLSMVCLLSGLLFLAFGCRRKTKSWATKQTSYKEEQNISGPFSFQTDSTTWVADVKQANSVPVVIFEKPLLNITFADLLYSTSNFDRGTLLAEGKFGPVYRGFLPSGIHVAVKVLVVGSTLTDQEAAKELEYLGRIKHPNLVPLTGYCFAGDQRIIIYDYMENGNLQNFLHDLPLGVQRTDDWSTDTWEEGDDMNGIHNASSEGLSLSSWRFRHKIALGTARALAFLHHGCYPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSSLNEEMARSSPGYVPPEFCQPEDDLPTPKSDVYCYGVVLFELITGKKPVGDDYPEEKEGTLVSWVRALVRKNLASRAIDPKINDRGIDDQIEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPAA 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2456g00058 854 ProSiteProfiles Protein kinase domain profile. 547 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2456g00058 854 Gene3D Transferase(Phosphotransferase) domain 1 623 853 - -
Pral2456g00058 854 SMART serkin_6 547 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2456g00058 854 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 133 229 - -
Pral2456g00058 854 SMART LRR_typ_2 331 355 IPR003591 -
Pral2456g00058 854 SMART LRR_typ_2 212 234 IPR003591 -
Pral2456g00058 854 SMART LRR_typ_2 115 138 IPR003591 -
Pral2456g00058 854 SMART LRR_typ_2 378 401 IPR003591 -
Pral2456g00058 854 SMART LRR_typ_2 163 187 IPR003591 -
Pral2456g00058 854 SMART LRR_typ_2 92 114 IPR003591 -
Pral2456g00058 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 284 420 - -
Pral2456g00058 854 FunFam Calmodulin-binding receptor kinase CaMRLK 258 374 - -
Pral2456g00058 854 ProSiteProfiles Leucine-rich repeat profile. 309 332 IPR001611 GO:0005515
Pral2456g00058 854 Pfam Leucine Rich Repeat 379 397 IPR001611 GO:0005515
Pral2456g00058 854 Gene3D Ribonuclease Inhibitor 182 431 IPR032675 -
Pral2456g00058 854 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Pral2456g00058 854 Gene3D Ribonuclease Inhibitor 32 181 IPR032675 -
Pral2456g00058 854 CDD STKc_IRAK 553 850 - -
Pral2456g00058 854 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515
Pral2456g00058 854 Pfam Leucine rich repeat 84 128 IPR001611 GO:0005515
Pral2456g00058 854 SUPERFAMILY L domain-like 50 422 - -
Pral2456g00058 854 ProSiteProfiles Leucine-rich repeat profile. 94 115 IPR001611 GO:0005515
Pral2456g00058 854 SUPERFAMILY Protein kinase-like (PK-like) 523 847 IPR011009 -
Pral2456g00058 854 ProSiteProfiles Leucine-rich repeat profile. 379 403 IPR001611 GO:0005515
Pral2456g00058 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Pral2456g00058 854 Pfam Protein tyrosine and serine/threonine kinase 551 845 IPR001245 GO:0004672|GO:0006468
Pral2456g00058 854 PRINTS Leucine-rich repeat signature 95 108 - -
Pral2456g00058 854 PRINTS Leucine-rich repeat signature 115 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2456g00058 Pral-Chr2456 239582 243011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2456g00058 40 850 Receptor kinase-like Gene Family AT5G07280 31.940 1.59e-111 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Pral2456g00058 PK_Tyr_Ser-Thr 6.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2456g00058 - - gmx:100797738 1322.38