Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2456g00052 ATGCCGCTTCAGAGTCATGCATCCGACCCTATAAAAAGGCTTTCCTCTCTCTTCCGAACCATCCCCTATGCGGCCATGCCTGAGCATCACGCTCTCCGGCCGCCTCCAATTCGAACCCTTGATCGTCCTGCTCAACCAGAGGATAAACGAGACGGTCGTGATAAAAATGAAGGGCAGCATGATGATGACGACGACGATGATGAGGAGAAGAAGCACCGGGAACGAGTCTGTGAAGAACCGTCTAGCGAGTTACGGAATTGTAAACCTACGGATGAGGAGGCAGAGCCGCAAGAATCTGCTTCAGAAACCCTAGCTACTCCCTCTTCGGTTGAAACGGTGGTGGCCAGTAAGAGTGCTGATTTGCAAGCCAGCTCTAGTACGCGGATTGATGGCAGAGATGAAAGTAAGGAGCCAAATGGGCCTTCAAAGATGGAAATTATTGTAAGAGAAACAGTTCAGGGAGCTTGTAATCAGACAGAAGATCGACTTGCGGTGTCTGTATATCCAACTCCGTTGTCCGTGCTATCACCATCTTTTGTTACACAACCTTTATCATCTGTTCCTAGTTCAACTGTATCAGAACAAATACCATCTCCTCAGAATGCTAATAATGGGCACACGCCGGGAACAGGCAAGAAAAATTCTTCTGGTGGTAAAGCTCTTTCTGCTGTTAATGTTGCAAGGGCATCTGCATCTGACGGATACAACTGGCGCAAGTATGGTCAGAAGCAAGTGAAGAGTCCAACTGGTTTTCGAAGCTATTACAGGTGTACTCATTCAGGGTGTAGTGCAAAGAAGATTGAATTTTGCGATCAGTCAGGGCATATGATAGAGATCATTTATAAAGGTCAACACAGCCATGAGCCACTACGGAAGACTAACACCACTGGGGAAATTAAGTTCATGCCATCTCGTGAACCTACAGTAGAAGCCAATCTTCCGGAACAGACCATTGGAGGGCTTAAGGATGCAGATCCAACCTCTTCTACAAAAGAAAGTCTACAACATTTACCGTGCAGTGCTGATAAGAAACGGCAAAATTCATCTGGTCTTAGTGAGAATGGTAAAGTTATTCTGAAGGTGGAGCATGTTGATGAACCAGAGCTGAAAAGAAGAGTGAAGAATGGTGACTTAACAAACTTGGACTCGCATGTGGGACCTGGAAAGAAATCTAAGTTTGTTGTACATGCAGCAGGGGATGTTGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTCAGAGGAAATTCCCATCCCAGAAATTACTACAGATGCACGTCTGCTGGATGTCCTGTCCGTAAGCAAATTGAGACTGCAGTAGATGATCCTACTGCTGTCATCATTACATATAAAGGAGCACATAACCATGACCAGCCTGTGCCCAGGAAACGACAAGGCCCACCAAGTGCTCCTCTTGTGGCTACTATTGCCCCTGCTTCGTCAAACAACTTGGACCTCAAGAGTACTGATTCACTGCAAAACCAAGAAAATTCTGCTCAGTGGTCGGAGGACTCTGAAGAAGAATTAACTGAAGATGCTTCCGACCTCGGGGGTGAGAAAGCAATTGAGTCGGCTCGAACTCTTTTAAGCATGGGTGAAATTAAGCCTTGCTGA 1629 0.4635 MPLQSHASDPIKRLSSLFRTIPYAAMPEHHALRPPPIRTLDRPAQPEDKRDGRDKNEGQHDDDDDDDEEKKHRERVCEEPSSELRNCKPTDEEAEPQESASETLATPSSVETVVASKSADLQASSSTRIDGRDESKEPNGPSKMEIIVRETVQGACNQTEDRLAVSVYPTPLSVLSPSFVTQPLSSVPSSTVSEQIPSPQNANNGHTPGTGKKNSSGGKALSAVNVARASASDGYNWRKYGQKQVKSPTGFRSYYRCTHSGCSAKKIEFCDQSGHMIEIIYKGQHSHEPLRKTNTTGEIKFMPSREPTVEANLPEQTIGGLKDADPTSSTKESLQHLPCSADKKRQNSSGLSENGKVILKVEHVDEPELKRRVKNGDLTNLDSHVGPGKKSKFVVHAAGDVGISGDGYRWRKYGQKMVRGNSHPRNYYRCTSAGCPVRKQIETAVDDPTAVIITYKGAHNHDQPVPRKRQGPPSAPLVATIAPASSNNLDLKSTDSLQNQENSAQWSEDSEEELTEDASDLGGEKAIESARTLLSMGEIKPC 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2456g00052 542 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 SMART WRKY_cls 231 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 MobiDBLite consensus disorder prediction 181 219 - -
Pral2456g00052 542 MobiDBLite consensus disorder prediction 317 354 - -
Pral2456g00052 542 Gene3D WRKY domain 218 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 Gene3D WRKY domain 389 465 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 MobiDBLite consensus disorder prediction 486 524 - -
Pral2456g00052 542 MobiDBLite consensus disorder prediction 42 95 - -
Pral2456g00052 542 SUPERFAMILY WRKY DNA-binding domain 400 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 Pfam WRKY DNA -binding domain 233 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 Pfam WRKY DNA -binding domain 406 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 MobiDBLite consensus disorder prediction 322 354 - -
Pral2456g00052 542 FunFam WRKY transcription factor 390 465 - -
Pral2456g00052 542 MobiDBLite consensus disorder prediction 99 126 - -
Pral2456g00052 542 MobiDBLite consensus disorder prediction 486 505 - -
Pral2456g00052 542 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 ProSiteProfiles WRKY domain profile. 226 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 SUPERFAMILY WRKY DNA-binding domain 229 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral2456g00052 542 MobiDBLite consensus disorder prediction 25 145 - -
Pral2456g00052 542 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 195 506 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2456g00052 Pral-Chr2456 225397 229805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2456g00052 135 542 WRKY Transcription Factor Family AT4G30935 48.122 1.66e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pral2456g00052 WRKY 3.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2456g00052 - - pcin:129320486 887.486