Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2456g00046 ATGGCAATCATAGTCAGCACTCTGAGAACAATCATTGATGCTTTCTACCTTATACGCATGGCTCTCCAGTTTCGTACTGCATACATAGCTCCATCGTCTCGTGTTTTTGGACGAGGTGAACTTGTTATAGATCCATCACAAATAGCCAAGCGATACATGCTGCAATATTTCATTATCGATTTCCTTTCAGTGTTGCCCATGCCACAGATTGTAGTTTGGAGATTTCTTCGGAGGTCAAAAGGTTCAGATGTATTGGCCACAAAGGAGGCCTTACTGTTCATTGTCTTGCTTCAATATGTTCCTAGATTGCTTCGGATGGTACCATTGACTTCAGAACTTAAGAGAACCGCTGGCGTCTTTGCTGAAACTGCATGGGCAGGAGCTGCGTATTATTTGCTATTATACATGCTAGCTAGTCATATAGTTGGGGCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTCATGCTGGCAGAAGGCTTGTAGTGAAAATGGATGTAACAAAAATTTCTTGTACTGTGGCAACGAGCACATGGAAGGTTATAGTGCCTGGCAAAATAGAAGCAGAGATATTTTCAATTCACAGTGCTCTGTGAATACTGAAAATCCACCTTTTGATTATGGAATTTTTACCCAAGCATTTTCATCTGGGATCGTTTCATCTAAAACGTTCATCTCTAAATACTGCTACTGCTTATGGTGGGGGCTCCAGAATTTGAGTACACTGGGCCAAGGGCTTGAAACCAGCACCTATTCTGGGGAGGTTATATTTTCAATAGCGCTAGCCATTTTTGGGCTTATCCTCTTTGCACTCCTGATTGGTAACATGCAGACGTACCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCCCATGAGCTTAGGGAACGTGTTAGACGCTATGATCAATATAAGTGGTTGGCAACGCGTGGTGTTGATGAAGAAAGTTTGGTGCAGAGTCTACCGAAGGATCTTAGACGGGATATTAAGCGTCATCTTTGTCTGGCTTTAGTGAGAAGGGTTCCACTATTCGAGAGTATGGATGAGAGATTACTTGATGCAATTTGTGAGAGACTGAAACCATGTTTGTTTACAGAGAGTACTTACATTGTTCGAGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATCCGTGGTCGCCTCGAGAGTGTCACCACTGATGGCGGGAGAAGTGGATTTTTTAACCGCACTTTCCTAAAAGAAACAGACTTCTGTGGTGAGGAGCTTTTAACTTGGGCCTTGGATCCCAAGTCTGGTTCTAACCTTCCATCTTCTACTAGAACAGTTAAGACACTTGCAGAGGTTGAGGCTTTTGCATTGATATCTGAAGATTTAAAGTTTGTTGCAAGTCAATTTAGGCGGCTCCATAGCAGGCAGGTTCAACACACCTTCCGCTTTTACTCACAACAATGGAGAACTTGGGCTGCTTGCTTTATTCAAGCAGCCTGGCGTCGTTATTGCAAGAGGAAGATGATGGAGCTTCGTCGAAAAGAAGAATCCGAGGAATCCGGAGGAGCTCGCAACAATCCCAGTGGTGGTTCATACAGCCTTGGTGCCACCTTCTTAGCCTCAAGATTTGCAGCCAACGCTCTTCGTGGTATACATCGCAATAGGAATGCTAAGACTGCCAGGGAATTGGTGACACTACAGAAGCCACCAGAGCCTGACTTCACTGCAGATGAATGA 1758 0.4403 MAIIVSTLRTIIDAFYLIRMALQFRTAYIAPSSRVFGRGELVIDPSQIAKRYMLQYFIIDFLSVLPMPQIVVWRFLRRSKGSDVLATKEALLFIVLLQYVPRLLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAVERNDSCWQKACSENGCNKNFLYCGNEHMEGYSAWQNRSRDIFNSQCSVNTENPPFDYGIFTQAFSSGIVSSKTFISKYCYCLWWGLQNLSTLGQGLETSTYSGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPHELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKETDFCGEELLTWALDPKSGSNLPSSTRTVKTLAEVEAFALISEDLKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKRKMMELRRKEESEESGGARNNPSGGSYSLGATFLASRFAANALRGIHRNRNAKTARELVTLQKPPEPDFTADE 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2456g00046 585 SMART cnmp_10 360 491 IPR000595 -
Pral2456g00046 585 CDD CAP_ED 360 491 IPR000595 -
Pral2456g00046 585 Gene3D Helix hairpin bin 288 351 - -
Pral2456g00046 585 FunFam Cyclic nucleotide-gated ion channel 1 358 476 - -
Pral2456g00046 585 Gene3D - 2 285 - -
Pral2456g00046 585 FunFam Cyclic nucleotide-gated ion channel 1 287 351 - -
Pral2456g00046 585 SUPERFAMILY Voltage-gated potassium channels 4 282 - -
Pral2456g00046 585 ProSiteProfiles cAMP/cGMP binding motif profile. 360 444 IPR000595 -
Pral2456g00046 585 MobiDBLite consensus disorder prediction 566 585 - -
Pral2456g00046 585 Pfam Ion transport protein 4 286 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral2456g00046 585 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 581 - -
Pral2456g00046 585 SUPERFAMILY cAMP-binding domain-like 289 479 IPR018490 -
Pral2456g00046 585 ProSiteProfiles IQ motif profile. 496 525 IPR000048 GO:0005515
Pral2456g00046 585 Gene3D Jelly Rolls 358 478 IPR014710 -
Pral2456g00046 585 PRINTS EAG/ELK/ERG potassium channel family signature 273 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral2456g00046 585 PRINTS EAG/ELK/ERG potassium channel family signature 20 29 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral2456g00046 585 PRINTS EAG/ELK/ERG potassium channel family signature 255 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral2456g00046 585 PRINTS EAG/ELK/ERG potassium channel family signature 137 147 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral2456g00046 585 PRINTS EAG/ELK/ERG potassium channel family signature 323 330 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2456g00046 Pral-Chr2456 192555 196415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2456g00046 1 584 Ion Channels AT5G57940 80.409 0.0 978
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2456g00046 K05391 - gmx:100820202 1027.7