Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2456g00045 ATGCATGATCAATATTCAAAGATGTTTGACTGTGGTTACAAGTCACAATACGAGGGAGGCCAGCGGGAGAAATTTGTGAGGTTGGATCACATGGACTCCAGACTATCTTCATCTTCTGATGTTGGACATAATAAGTGTGGATTTGGTACAATGAGATTAAGCCATGGCGGTTATGCACGCATTGGAACCACTGGATCCTTTAAAAGGGGGATGAGAAAGGGATCTGAAGGGCTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAGGGCAGTATTCCCTGAAGACCTTAAAGTGTCAGAGAAGAAGATATTTGATCCTCAAGACAAATTTTTACTCTTGTGGAATAAGCTTTTTGTAATCTCATGCATTTTGGCTGTCTCCATTGATCCATTGTTTTTTTATCTCCCTGTGATCAATGACTCAGTAAACTGTCTTGGTATAGATCAAAACATGGCAATCATAGTCAGCACTCTGAGAACAATCATTGATGCTTTCTACCTTATACGCATGGCTCTCCAGTTTCGTACTGCATACATAGCTCCATCGTCTCGTGTTTTTGGACGAGGTGAACTTGTTATAGATCCATCACAAATAGCCAAGCGATACATGCTGCAATATTTCATTATCGATTTCCTTTCAGTGTTGCCCATGCCACAGATTGTAGTTTGGAGATTTCTTCGGAGGTCAAAAGGTTCAGATGTATTGGCCACAAAGGAGGCCTTACTGTTCATTGTCTTGCTTCAATATGTTCCTAGATTGCTTCGGATGGTACCATTGACTTCAGAACTTAAGAGAACCGCTGGCGTCTTTGCTGAAACTGCATGGGCAGGAGCTGCGTATTATTTGCTATTATACATGCTAGCTAGTCATATAGTTGGGGCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTCATGCTGGCAGAAGGCTTGTAGTGAAAATGGATGTAACAAAAATTTCTTGTACTGTGGCAACGAGCACATGGAAGGTTATAGTGCCTGGCAAAATAGAAGCAGAGATATTTTCAATTCACAGTGCTCTGTGAATACTGAAAATCCACCTTTTGATTATGGAATTTTTACCCAAGCATTTTCATCTGGGATCGTTTCATCTAAAACGTTCATCTCTAAATACTGCTACTGCTTATGGTGGGGGCTCCAGAATTTGAGTACACTGGGCCAAGGGCTTGAAACCAGCACCTATTCTGGGGAGGTTATATTTTCAATAGCGCTAGCCATTTTTGGGCTTATCCTCTTTGCACTCCTGATTGGTAACATGCAGACGTACCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCCCATGAGCTTAGGGAACGTGTTAGACGCTATGATCAATATAAGTGGTTGGCAACGCGTGGTGTTGATGAAGAAAGTTTGGTGCAGAGTCTACCGAAGGATCTTAGACGGGATATTAAGCGTCATCTTTGTCTGGCTTTAGTGAGAAGGGTTCCACTATTCGAGAGTATGGATGAGAGATTACTTGATGCAATTTGTGAGAGACTGAAACCATGTTTGTTTACAGAGAGTACTTACATTGTTCGAGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATCCGTGGTCGCCTCGAGAGTGTCACCACTGATGGCGGGAGAAGTGGATTTTTTAACCGCACTTTCCTAAAAGAAACAGACTTCTGTGGTGAGGAGCTTTTAACTTGGGCCTTGGATCCCAAGTCTGGTTCTAACCTTCCATCTTCTACTAGAACAGTTAAGACACTTGCAGAGGTTGAGGCTTTTGCATTGATATCTGAAGATTTAAAGTTTGTTGCAAGTCAATTTAGGCGGCTCCATAGCAGGCAGGTTCAACACACCTTCCGCTTTTACTCACAACAATGGAGAACTTGGGCTGCTTGCTTTATTCAAGCAGCCTGGCGTCGTTATTGCAAGAGGAAGATGATGGAGCTTCGTCGAAAAGAAGAATCCGAGGAATCCGGAGGAGCTCGCAACAATCCCAGTGGTGGTTCATACAGCCTTGGTGCCACCTTCTTAGCCTCAAGATTTGCAGCCAACGCTCTTCGTGGTATACATCGCAATAGGAATGCTAAGACTGCCAGGGAATTGGTGACACTACAGAAGCCACCAGAGCCTGACTTCACTGCAGATGAATGA 2214 0.4336 MHDQYSKMFDCGYKSQYEGGQREKFVRLDHMDSRLSSSSDVGHNKCGFGTMRLSHGGYARIGTTGSFKRGMRKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSIDPLFFYLPVINDSVNCLGIDQNMAIIVSTLRTIIDAFYLIRMALQFRTAYIAPSSRVFGRGELVIDPSQIAKRYMLQYFIIDFLSVLPMPQIVVWRFLRRSKGSDVLATKEALLFIVLLQYVPRLLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAVERNDSCWQKACSENGCNKNFLYCGNEHMEGYSAWQNRSRDIFNSQCSVNTENPPFDYGIFTQAFSSGIVSSKTFISKYCYCLWWGLQNLSTLGQGLETSTYSGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPHELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKETDFCGEELLTWALDPKSGSNLPSSTRTVKTLAEVEAFALISEDLKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKRKMMELRRKEESEESGGARNNPSGGSYSLGATFLASRFAANALRGIHRNRNAKTARELVTLQKPPEPDFTADE 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2456g00045 737 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 97 733 - -
Pral2456g00045 737 CDD CAP_ED 512 643 IPR000595 -
Pral2456g00045 737 MobiDBLite consensus disorder prediction 718 737 - -
Pral2456g00045 737 Gene3D Helix hairpin bin 440 503 - -
Pral2456g00045 737 SMART cnmp_10 512 643 IPR000595 -
Pral2456g00045 737 ProSiteProfiles IQ motif profile. 648 677 IPR000048 GO:0005515
Pral2456g00045 737 SUPERFAMILY Voltage-gated potassium channels 107 434 - -
Pral2456g00045 737 SUPERFAMILY cAMP-binding domain-like 441 631 IPR018490 -
Pral2456g00045 737 FunFam Cyclic nucleotide-gated ion channel 1 439 503 - -
Pral2456g00045 737 Pfam Ion transport protein 115 438 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral2456g00045 737 FunFam Cyclic nucleotide-gated ion channel 1 510 628 - -
Pral2456g00045 737 Gene3D Jelly Rolls 510 630 IPR014710 -
Pral2456g00045 737 ProSiteProfiles cAMP/cGMP binding motif profile. 512 596 IPR000595 -
Pral2456g00045 737 PRINTS EAG/ELK/ERG potassium channel family signature 172 181 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral2456g00045 737 PRINTS EAG/ELK/ERG potassium channel family signature 407 418 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral2456g00045 737 PRINTS EAG/ELK/ERG potassium channel family signature 289 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral2456g00045 737 PRINTS EAG/ELK/ERG potassium channel family signature 475 482 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral2456g00045 737 PRINTS EAG/ELK/ERG potassium channel family signature 425 434 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral2456g00045 737 Gene3D - 118 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2456g00045 Pral-Chr2456 190984 196415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2456g00045 8 737 Ion Channels AT2G23980 75.834 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2456g00045 K05391 - gmx:100820202 1256.12