Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2456g00001 ATGGGGAAACACAGGAGTAACGCAAACAAGAACAGTAACCCTAAGGCCACTAATAACAGTAGTCTGACTGCTTCCACCACCCCCAAGAAACGAACCAGGCGAAGTGTTCCCAGAGATGCACCTCTTCAACGTAGCTCAAAATACAGAGGAGTCACTAGACACAGATGGACAGGACGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCGCAGAACAAGAAAGGACGACAAGTGTATCTGGGTGCTTATGATGATGAAGAGGCTGCAGCACATGCTTATGATCTAGCAGCGTTGAAGTATTGGGGTCAAGATACCATACTAAACTTTCCGTTATCGACTTATCTCAACAAAATGAAAGAAATGGACGGTCAGTCAAGGGAAGAATATATTGGATCATTAAGAAGGAAAAGCAGCGGTTTTTCTCGGGGAGTTTCTAAATACAGAGGCGTGGCAAGACATCATCATAATGGAAGATGGGAAGCTCGCATTGGCAGAGTTTTCGGCAACAAATATCTTTATCTTGGGACTTATG 541 0.4362 MGKHRSNANKNSNPKATNNSSLTASTTPKKRTRRSVPRDAPLQRSSKYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYLNKMKEMDGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2456g00001 180 ProSiteProfiles AP2/ERF domain profile. 149 180 IPR001471 GO:0003700|GO:0006355
Pral2456g00001 180 SUPERFAMILY DNA-binding domain 46 115 IPR016177 GO:0003677
Pral2456g00001 180 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 180 - -
Pral2456g00001 180 Gene3D AP2/ERF domain 148 180 IPR036955 GO:0003700|GO:0006355
Pral2456g00001 180 Gene3D AP2/ERF domain 46 115 IPR036955 GO:0003700|GO:0006355
Pral2456g00001 180 Pfam AP2 domain 46 105 IPR001471 GO:0003700|GO:0006355
Pral2456g00001 180 FunFam AP2-like ethylene-responsive transcription factor 46 115 - -
Pral2456g00001 180 MobiDBLite consensus disorder prediction 1 50 - -
Pral2456g00001 180 ProSiteProfiles AP2/ERF domain profile. 47 113 IPR001471 GO:0003700|GO:0006355
Pral2456g00001 180 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Pral2456g00001 180 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
Pral2456g00001 180 SMART rav1_2 47 119 IPR001471 GO:0003700|GO:0006355
Pral2456g00001 180 MobiDBLite consensus disorder prediction 1 30 - -
Pral2456g00001 180 SUPERFAMILY DNA-binding domain 148 180 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2456g00001 Pral-Chr2456 494 2645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2456g00001 29 180 AP2-EREBP Transcription Factor Family AT1G72570 65.161 7.53e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral2456g00001 AP2 9.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2456g00001 K09285 - msin:131217079 311.227