Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2442g00001 ATGAACTCTGCTCATGACCATAGTCACCCACCGCTTCTGTCGGACTCTTCTGACTCTGACTCCGACCATGAGCAGCCTAGCTCCGTGCTACTTCGCCACATGGACCTCTCAGACTCCATTTTCAAATCTTATTTCGAGTTCATTGGCCAGTCATCGGCAACTGCTGCTGACCTTTCAAAGATCCAGTCTTTTCTCACATCCTCCTCCTCCGGTGCTCTATCATGCTTGATATGCCTCGAACGCATCAGACTCTCCGATCCCACTTGGTCCTGCTCCTCCCTCTGCTACGCTGTCTTTCATCTTGTCTGCATACAGAGCTGGGCGCGCCAGGCATCCGACCTCGCCGCGCGCGCGGCAACGCGCCTACCTGTTACAGTTGACAAGGCTGCCGAGTCTGCCACATGGAACTGCCCTAAATGCAGGGCTGAATACTCCAAAACTCAGATCCCTAAATCCTATGTGTGTTTCTGTGGAAAATTGGAGAATCCTCCAAGTGATGATCCCTGGGTATTGCCACATTCATGTGGCGACGTTTGTAATAGGCCGTTGAAGAACAATTGCGGGCATTATTGCTTGTTGCTGTGCCATCCAGGGCCATGCCCATCATGCCCAAAGCTTGTCAAGTCTCGGTGCTTTTGTGGGTCACTTCAAGACGTTCGCAGATGCGGGTATAAGGAATTTTCCTGTAACAATCCTTGTTCGAAGCTCTTGGACTGTGGTGTTCACAGGTGTTCTGAGATCTGTCATGTTGGCCCTTGCCCACCTTGCCGAGCCCGTGGAGTTTTTAAGTGCCAATGCGGGCAGAAAAGGGAGGAGAGGGAGTGTTGTGATCGCATTTTTCAATGCGATACTCCATGCGAGAAGGTTCTTAGCTGCGGGAAGCACATTTGTCAGAAAGGATGCCATTCCAGTGGGTGTGGCGAGTGCCCTTTTCAGGGTAAGAGGACGTGTCCATGCGGGAAGAGGACTTATAGAGACATTCCTTGTGATGCTGTGGTACAATTGTGTGGAGCGACTTGCGATAAAATGCTCAGTTGCGGATATCACAAGTGCCCTGAGAGATGCCACCGTGGGCAATGCATTGAGACCTGCAGAACTGTTGTAAGGAAATCCTGCCGTTGTGGGAGCCTGAAGAAAGAGGTCCCTTGCTATCAAGAGTTGTCATGTGAAAGGAAGTGTCAGAGGATACGTGACTGTGGGCGGCATCCATGTAAACGTCGCTGCTGTGATGGTGACTGCCCTCCATGTTCAGAGATATGTGGCAAGAGGCTTCGATGTAAAAACCATAAATGTCCTTCTCCATGCCACCGGGGTCCCTGTGCTCCATGTCCAATAATGGTGACAATCTCATGTGCATGTGGTGAGACACATTTTGAGGTTCCTTGCGGTACTGAAATGAATCAAAAGCCACCTAAATGCCCAAAACGTTGTCCTATTACTCCTTTATGCAGGCATGCGCCAAATTCCAAGCCTCACAAATGTCATTATGGAGCCTGTCCTACTTGTCGGCTTCCGTGTGAAGAAGAGTACCCTTGTGGCCACAAATGCAAATTAAGGTGTCATGGTCCACAACCTCCTCCTAATCCAGAGTTTACACTGAAGCCAAAGAAAAAAAAGACAATACGGCAGACTGGAGGTATTCCTGGCACAGCTTGCCCTCCTTGTCCTGAACTTGTATGGAGATCATGTGTTGGGCAACACATTGGAGCAGAGAGAATGATGGTCTGCTCTGATAGATCACAATTTTGCTGTGAAAATTTGTGTGGAAACCCTTTGCCATGCGGTAATCATTTTTGTACTAAAACCTGCCATGCCTTAGAGACACTGTCCTCCTCGGAACAGCTACAGAGAAGTGAGCCTTGTGAAGATTGTACTCTTCCATGTGAAAAGGTAAGAGAGCCGAAGTGTCCTCATCACTGCCCTCAGCCTTGCCATCCTGGAGAGTGCCCTCCATGCAAAGTGCTCATTAAACGGTCTTGTCATTGTGGCTCAATGGTCCATGTTTTTGAGTGCATCTACTACAACAGCTTGTCTGCCAAGGATCAAGAGTCTGTTCGATCATGCCGTGGGCCTTGTCACAGAAAGTTGCCATATTGTACACATCTGTGTCCTGAGACATGTCATCCTGGTCAATGCCCATATCCTGATAAATGTTCTAAAAAGGTCACTGTTCGTTGCAAATGCCAAACTCTGAGGAAAGAGTGGTTATGTCAAGATGTTCAAGCAGCCTATTATCGTGATGGTTGCCTTCCCAGAGATGTACCAAAAAATCACTTTGGAATTGGACTTATTCCTTGCAATTCTGATTGCAAGAGTAAAGCGCAAGTTGTTGAGTCAGAACTGCAATTACGTAAATCCCAAGTTATGGAGGAAAAAGCACCCGAGACTGGAAAGTCAGTACCAAAACGACGGAAAAGGCGGGAACGCATACAGCAGTCCAGCCAATCAACAAAACTGCAGAAAATTGCATCTTCTACGAAACGGCTTCTTCTTTTTGTCTTACTGTTCATGGCCCTTCTTGCGGCCATATATTATGGCTACAAGGGTCTTTTATGGCTCAATGACTGGATGAATGAAGTTGATGAGCGAAGACAAAGAAGATTTCTCGAATCTCATAAGTACAGTGGTTAA 2631 0.4785 MNSAHDHSHPPLLSDSSDSDSDHEQPSSVLLRHMDLSDSIFKSYFEFIGQSSATAADLSKIQSFLTSSSSGALSCLICLERIRLSDPTWSCSSLCYAVFHLVCIQSWARQASDLAAXRAATRLPVTVDKAAESATWNCPKCRAEYSKTQIPKSYVCFCGKLENPPSDDPWVLPHSCGDVCNRPLKNNCGHYCLLLCHPGPCPSCPKLVKSRCFCGSLQDVRRCGYKEFSCNNPCSKLLDCGVHRCSEICHVGPCPPCRARGVFKCQCGQKREERECCDRIFQCDTPCEKVLSCGKHICQKGCHSSGCGECPFQGKRTCPCGKRTYRDIPCDAVVQLCGATCDKMLSCGYHKCPERCHRGQCIETCRTVVRKSCRCGSLKKEVPCYQELSCERKCQRIRDCGRHPCKRRCCDGDCPPCSEICGKRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMNQKPPKCPKRCPITPLCRHAPNSKPHKCHYGACPTCRLPCEEEYPCGHKCKLRCHGPQPPPNPEFTLKPKKKKTIRQTGGIPGTACPPCPELVWRSCVGQHIGAERMMVCSDRSQFCCENLCGNPLPCGNHFCTKTCHALETLSSSEQLQRSEPCEDCTLPCEKVREPKCPHHCPQPCHPGECPPCKVLIKRSCHCGSMVHVFECIYYNSLSAKDQESVRSCRGPCHRKLPYCTHLCPETCHPGQCPYPDKCSKKVTVRCKCQTLRKEWLCQDVQAAYYRDGCLPRDVPKNHFGIGLIPCNSDCKSKAQVVESELQLRKSQVMEEKAPETGKSVPKRRKRRERIQQSSQSTKLQKIASSTKRLLLFVLLFMALLAAIYYGYKGLLWLNDWMNEVDERRQRRFLESHKYSG 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2442g00001 877 MobiDBLite consensus disorder prediction 788 816 - -
Pral2442g00001 877 SMART znfxneu3 637 655 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 484 505 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 700 721 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 595 627 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 188 206 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 513 558 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 240 259 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 400 419 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 293 312 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 427 446 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 SMART znfxneu3 347 367 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 CDD NF-X1-zinc-finger 176 224 - -
Pral2442g00001 877 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 52 509 IPR034078 GO:0003700
Pral2442g00001 877 CDD RING-CH-C4HC3_NFXL1 73 142 - -
Pral2442g00001 877 CDD NF-X1-zinc-finger 337 386 - -
Pral2442g00001 877 ProSitePatterns Zinc finger PHD-type signature. 75 141 IPR019786 -
Pral2442g00001 877 SUPERFAMILY RING/U-box 73 150 - -
Pral2442g00001 877 MobiDBLite consensus disorder prediction 11 25 - -
Pral2442g00001 877 CDD NF-X1-zinc-finger 390 438 - -
Pral2442g00001 877 CDD NF-X1-zinc-finger 283 330 - -
Pral2442g00001 877 CDD NF-X1-zinc-finger 625 666 - -
Pral2442g00001 877 MobiDBLite consensus disorder prediction 1 25 - -
Pral2442g00001 877 Pfam NF-X1 type zinc finger 513 522 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 Pfam NF-X1 type zinc finger 421 445 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 Pfam NF-X1 type zinc finger 400 418 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 Pfam NF-X1 type zinc finger 347 365 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 Pfam NF-X1 type zinc finger 188 205 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 Pfam NF-X1 type zinc finger 595 605 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 Pfam NF-X1 type zinc finger 701 719 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 Pfam NF-X1 type zinc finger 494 504 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 Pfam NF-X1 type zinc finger 639 654 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 Pfam NF-X1 type zinc finger 240 258 IPR000967 GO:0005634|GO:0008270
Pral2442g00001 877 CDD NF-X1-zinc-finger 230 278 - -
Pral2442g00001 877 CDD NF-X1-zinc-finger 417 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2442g00001 Pral-Chr2442 1483 8844 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Pral2442g00001 zf-NF-X1 0.003 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2442g00001 K15683 - qsa:O6P43_020197 1491.09