Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2440g00006 ATGGGTTCTCTTCAGCCCCCGATCTCTTCCACTTCTTCTTCATCTTCAGGTTTTTTCATCAGTGATATGTTTGGGGTCAACTTGGAACGAGAAGGAGAAGAAGGGGAGGAGGAAGAAGAAGAAGAAGAGCTTGGAGCTATGAAGGAGATGATGTACAAGAATGCCGCTCTGCAACCCGTCGACATCGACCCTTCCACCATCCGGAAACCCAAACGGAGGAATGTCCGGATCAGCGACGACCCACAGAGCGTTGCCGCCCGCCACCGCCGTGAGAGAATCAGCGAGAAGATCCGCATCCTCCAGAGACTCGTCCCCGGCGGAACCAAGCTCGACACCGCCACCATGCTCGACGAAGCCATTCGCTACGTCAAGTTCTTGAAGAGACAAATCAGGCTGCTCCAACCTCCACCACCACCCCAGCAACAACACGGCAACAATATGAGCACGATCTCCACCGGCAATTCCACACTCGCCAATTGGCCTTTTACAGCAACCACACTCCCCGCCGCCACCGGCGTAGGGTTCAACGGTGGTGACAGCTCCTCGGGGTTTAACCATGAGGTAATAAGTGAATAA 576 0.5434 MGSLQPPISSTSSSSSGFFISDMFGVNLEREGEEGEEEEEEEELGAMKEMMYKNAALQPVDIDPSTIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKLDTATMLDEAIRYVKFLKRQIRLLQPPPPPQQQHGNNMSTISTGNSTLANWPFTATTLPAATGVGFNGGDSSSGFNHEVISE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2440g00006 191 SMART finulus 83 132 IPR011598 GO:0046983
Pral2440g00006 191 Pfam Helix-loop-helix DNA-binding domain 87 126 IPR011598 GO:0046983
Pral2440g00006 191 CDD bHLH_AtIND_like 78 133 - -
Pral2440g00006 191 Gene3D - 80 143 IPR036638 GO:0046983
Pral2440g00006 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 126 IPR011598 GO:0046983
Pral2440g00006 191 FunFam BHLH transcription factor 80 144 - -
Pral2440g00006 191 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 161 IPR045843 GO:0003700|GO:0006355
Pral2440g00006 191 Coils Coil 30 50 - -
Pral2440g00006 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 136 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2440g00006 Pral-Chr2440 38935 39510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2440g00006 44 149 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 79.279 4.67e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2440g00006 HLH 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2440g00006 - - pcin:129307933 232.646