Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2437g00004 ATGCCAATTTTGACACAAACATGCAGCAGGTTTGCTTTTGAGACATCAGATGAAGCTGCAGCTCGTGTAGCGGCAAAAGGGTTGAAGAAGAGTGTTTTGCGTCAGATCCCTATAGTTGTATACGGTTCATCAGGTTCTACTGATATTGGAGCCACTGAGTGTCCAATTTGCCTAGGAGAGTTTGTGGATGGAGAGAAAGTGAGGGTTCTTCCAAAGTGCAACCATGGATTCCACGTGAGGTGCATAGACACATGGCTTCTCTCGCATTCTTCTTGCCCTACTTGCAGGCAGTCTTTGCTTGACCAGCATAATGCAAGCACTTCTGGTTCTGGCAATGTATAG 342 0.462 MPILTQTCSRFAFETSDEAAARVAAKGLKKSVLRQIPIVVYGSSGSTDIGATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLDQHNASTSGSGNV 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2437g00004 113 FunFam RING-H2 finger protein ATL72-like 19 100 - -
Pral2437g00004 113 SMART ring_2 54 95 IPR001841 -
Pral2437g00004 113 ProSiteProfiles Zinc finger RING-type profile. 54 96 IPR001841 -
Pral2437g00004 113 SUPERFAMILY RING/U-box 53 102 - -
Pral2437g00004 113 PANTHER RING-H2 FINGER PROTEIN ATL78 8 110 IPR044602 GO:0016567|GO:0016740
Pral2437g00004 113 SMART FANCL_C_2 50 100 - -
Pral2437g00004 113 Pfam Ring finger domain 53 96 IPR001841 -
Pral2437g00004 113 CDD RING-H2_EL5-like 53 96 - -
Pral2437g00004 113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 101 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2437g00004 Pral-Chr2437 27463 28305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2437g00004 24 100 C3H Transcription Factor Family AT3G10910 79.221 2.97e-40 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2437g00004 - K19040 cave:132186496 169.088