LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2435g00001	ATGGCGATTCAAGTTTCAGCACCATCCTCCCATGGCGTCGCCCGGGAACCAAAGTATAGATATGATGTTTTTCTGAGTTTTAGAGGCGAAGATACTCGCCATTCATTCACTGTCATTCTCTACAATGCTCTGCACCGTAAGGGGATCAACGCCTTCATTGATGACAAGAAGCTTGGCAAAGGGGAACGGATCTCACCGACGCTTCTTAAAGCCATAGAGAAATCTAGGATTTCGATTATTGTGTTTTCTATGAACTACGCTACTTCCACATGGTGTCTGGAGGAACTTGCTCACATCATTCGGTGTAAGAAGGAGAAGAACCAGATGGTTATGCCAATATTTTACAAGGTGGATCCGATAGATATCCAATATCAGAGGAATAGTTTTGAGAAAGCCATGGTTGCTCATGAAGATAGGTTCAGAAATGACTTGGAGAAAGTGCAAAGATGGAGGTCTGCTTTGTCTGAAGCGGCTAGTTTGTCGTCGGCTTGGCTTTTCAAAGATGGATATGAATTCGGGTTTATTGAAAGGATTGTTGAAGATGCATATTCTAGGCTGCCTCCTAAACGATTCCATAACATTGATTACATGGTTGGACTTGAGCCTCGTTTAGAAGAAGTGATGTCACTTCTGGATGAAAGTGATCGTAGCGTTTGTATGTTGGGGATTCATGGAACTGGTGGGATTGGCAAAACAACCCTTGCCAAAGCTTTGTATAATACAATCTTCTACCAATTTGAAGGTGCATGTTTTTTGTTTGATGTTAGAGAAGCATCAATGAAACATCATGGCAATGAGGGCATTGTTCGTCTTCAACAGACGCTTTTATCAGAGATTCTTGGGGAAAAGAGGATAAAGTTTAGCAGTGTTGATGAAGGAATATCTATACTAAGACACAGACTCTCACACAAAAAAGTTTTGTTGGTTCTTGATGATGTCGATCAACCTGATCGGCTAGAGCAACTTGCAGGAGGGTGTGATTGGTTTGGTTGTGGAAGCAAGGTGATCATAACAACAAGAAATAAGCAATTGCTAATTGCACGTAATGTTGAAAAGACATATGAAATGATGGGGCTAAATGATCATGACTCACTTGAACTCTTTTGTTGGCATGCCTTCAAGTTGAGCCAACCTCCAAAAGGATATCAAGATATGTCAAATTGTGCGAGCAGATATGCACAAGGCCTTCCTCTGGCTTTAAAATTAATAGGCTCCAATTTGGCACATAGAAACTTAGAAGAATGGAAGTCTACATTGGAACAATATGAGAAGATCCCAGAAAGGACAACTCATGAGATCCTAAAGATGAGCTATGATTGCTTACCAGATAATGCTAAGCGTATTTTCCTAGATATTGCTTGTTTCTTCAAGGCAAAGACATTTGTATACATCGAAGACATGGTAGAAGCTTGTGATTTTGGAAGGTTTTATTTTGAGGTGCTTGTTGAAAAATCTCTTATAACTATTTCTGATAATGGTAAGTTGGGCATGCATGATCTAATACAACAAATGGGTAGAGAGATTGTTAGGCAAGAGGCACCATCAAATCCTGATAAACGCAGTAGAATATGGTACTATAAAGATGTTCTTAAATTGCTTCGTGACAATTTAGGAAACAGTAACATTGAAGGAATAATGCTTGACCCCCCTCAACAAGAAGAAGTGACTTGGAGTGGTATAGCCTTCGAGAAGATGAATAATCTTAGAATTCTTGTGATTCGGAATACACAATTTTCAACGAACCCTAAATATTTACCGAATAGTTTAAGATTGCTTGATTGGGAGGGATATCCTTCTGCAAATTTACCATCAGATTTTTCTCCCAAGAAACTAACTTCCTTGAGGTTATGCAATAGCATATTCAGACTGGAAGAGCCATTCAAGAGGTCTGAATTCGTGACGCACATGAACGTTTCACATTGCCAATTCATAACTGAGGTGCCTGATATGTCTCAATTCCCAAATTTAAAAAGCTTGTTGTTTAGAGAGTGTTGCAACTTGATCAAGATGCACCATTCAGTGGGATCTCTCTCTAAGCTGGTCCACTTGGATGTTAGTGACTGCACCAAACTTACAAGCTTTCCACATGAAATCAACCTGCCATCTCTTGAAGATATTAATCTTAGCCGTTGTAAGGGTCTTGACTATTTCCCGCATATAGTGGGAAAGATGGATGCCTTAACCGATATTTGGGCTGAAGACACTTCTATTAAGGAGCTCCCACATTCCATTGGAAATCTTACTGAGCTCGAATGTTTAAATTTAAGCTCTTGCAAAAGTCTCAGGGAGCTTCCAAACAGCTTATTCACATTGCAAAATCTCAAGTGGCTTGAGTTGAGAGACAGTCACACTCCTAGCAGAAAATCTTTGATGAAATTAACGCAAGAGAGCCTCCTAATTATTAGCTGTGCAAACATCAAGTTCTTGAATCTTGAAAACTGTTGTCTATTGGATGAAGATCTTGCCTTAGTTCTGAACTTTTTTCGGGATTTGCGAGAGTTAACTCTATCAGGCAATGATTTTGTGTCCCTTCCTGAGTGCATCAATGAGTGTGTTGAATTGTTGAAACTGGAAATGGATAACTGCAAGAAGCTAAGAGACATACCGAAGTTGCCATCAAAGCTAAGAGACATAAAGGCAGAGTTTTGCACATCATTAACTGCCAAATCAGTTGGTCATTTATGGTCTCAGGTCAAGAATGAAACCAATCTCTTCAGAATATGTATGCCAGCAACAACATTTCCTGATTGGCTTGACGATTGTTGTAAAGGAGGAGCATTGTCTTTTCGTGCTCGTGGGAATTTCCCTCGTGCAGCCCTTGCATGTGAGTTGGGGAAAGCAAACGCGAGCGGGAGACACTTCTTCCATGTTTCTAAGATTTAA	2883	0.4006	MAIQVSAPSSHGVAREPKYRYDVFLSFRGEDTRHSFTVILYNALHRKGINAFIDDKKLGKGERISPTLLKAIEKSRISIIVFSMNYATSTWCLEELAHIIRCKKEKNQMVMPIFYKVDPIDIQYQRNSFEKAMVAHEDRFRNDLEKVQRWRSALSEAASLSSAWLFKDGYEFGFIERIVEDAYSRLPPKRFHNIDYMVGLEPRLEEVMSLLDESDRSVCMLGIHGTGGIGKTTLAKALYNTIFYQFEGACFLFDVREASMKHHGNEGIVRLQQTLLSEILGEKRIKFSSVDEGISILRHRLSHKKVLLVLDDVDQPDRLEQLAGGCDWFGCGSKVIITTRNKQLLIARNVEKTYEMMGLNDHDSLELFCWHAFKLSQPPKGYQDMSNCASRYAQGLPLALKLIGSNLAHRNLEEWKSTLEQYEKIPERTTHEILKMSYDCLPDNAKRIFLDIACFFKAKTFVYIEDMVEACDFGRFYFEVLVEKSLITISDNGKLGMHDLIQQMGREIVRQEAPSNPDKRSRIWYYKDVLKLLRDNLGNSNIEGIMLDPPQQEEVTWSGIAFEKMNNLRILVIRNTQFSTNPKYLPNSLRLLDWEGYPSANLPSDFSPKKLTSLRLCNSIFRLEEPFKRSEFVTHMNVSHCQFITEVPDMSQFPNLKSLLFRECCNLIKMHHSVGSLSKLVHLDVSDCTKLTSFPHEINLPSLEDINLSRCKGLDYFPHIVGKMDALTDIWAEDTSIKELPHSIGNLTELECLNLSSCKSLRELPNSLFTLQNLKWLELRDSHTPSRKSLMKLTQESLLIISCANIKFLNLENCCLLDEDLALVLNFFRDLRELTLSGNDFVSLPECINECVELLKLEMDNCKKLRDIPKLPSKLRDIKAEFCTSLTAKSVGHLWSQVKNETNLFRICMPATTFPDWLDDCCKGGALSFRARGNFPRAALACELGKANASGRHFFHVSKI	960

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2435g00001	960	SMART	till_3	20	160	IPR000157	GO:0007165
	Pral2435g00001	960	Gene3D	-	15	187	IPR035897	-
	Pral2435g00001	960	Gene3D	-	358	442	IPR042197	-
	Pral2435g00001	960	PRINTS	Disease resistance protein signature	393	407	-	-
	Pral2435g00001	960	PRINTS	Disease resistance protein signature	220	235	-	-
	Pral2435g00001	960	PRINTS	Disease resistance protein signature	745	761	-	-
	Pral2435g00001	960	PRINTS	Disease resistance protein signature	300	314	-	-
	Pral2435g00001	960	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	452	IPR027417	-
	Pral2435g00001	960	Pfam	TIR domain	21	166	IPR000157	GO:0007165
	Pral2435g00001	960	ProSiteProfiles	TIR domain profile.	19	186	IPR000157	GO:0007165
	Pral2435g00001	960	Gene3D	-	188	353	IPR027417	-
	Pral2435g00001	960	Gene3D	Ribonuclease Inhibitor	530	716	IPR032675	-
	Pral2435g00001	960	Gene3D	Ribonuclease Inhibitor	717	909	IPR032675	-
	Pral2435g00001	960	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	803	IPR044974	GO:0006952
	Pral2435g00001	960	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	187	-	-
	Pral2435g00001	960	SUPERFAMILY	L domain-like	546	895	-	-
	Pral2435g00001	960	SUPERFAMILY	Toll/Interleukin receptor TIR domain	16	160	IPR035897	-
	Pral2435g00001	960	SUPERFAMILY	"Winged helix" DNA-binding domain	431	533	IPR036390	-
	Pral2435g00001	960	Pfam	NB-ARC domain	203	426	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2435g00001	Pral-Chr2435	1708	6468	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2435g00001	21	779	WRKY Transcription Factor Family	AT4G12020	31.065	1.15e-91	318

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2435g00001	-		-	pcin:129284776	1273.07