Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2426g00047 ATGGGGTATGATTCCGATAGCCCCTCACAAGATGGGAGGGATGAAGATGATGATGAAGAATATGAGGAGGCTGGAAAAGGCAACCGTTTGCTGGGGTTCATGTTTGGAAATGTTGATAATTCGGGTGATCTTGATGCTGATTACCTTGATGAGGATGCAAAGGAGCATCTTTCTGCACTTGCTGAGAAGCTGGGTGCTTCCCTGACAGATATAGATTTGTCAGGAAAATCGCCACAAACACCACCTGACATTGTCGAACAAGACTATGGTGAGAAAGCTGAAGATGCGGTTGATTATGAAGATATTGATGAAGAATATGATGGTCCAGAGACAGAAGCTGCAAGTGAAGCGGAACATCTATTGTCCAAAAAGGAATTTTTCTCTGTTGGAGCCTCTCTTGAAGCCTTGAAATCCAGATCTTCTGTCTTTGATGATGAAAATTATGACGAGGAATCTGAAAAGGAGCAAGACTTGGTGAATGACGCTTCTGAAGTTAATAACATCTCTTCAACTGGGGAGCTGGTAGAGCCTCTTGTTGATGCATCTAAAGGAGAGAAAAGTCAAGAACTTGAATCACATGATGGCTCACAGCAGTCTGAAGACCTGGACACCAACTTGCAAAATCGCCAGGAGGAAGGGCCTGAGGTTTTGAAAGTTTCTGCTCCATTGCCTGTTCTATGTGTGGAAGATGGGATGGTCATTTTAAGGTTCTCTGAGATTTTTGGTATTCATGAACCTTTGAGAAAGGGAGGGAGGAGAGAGCAACGGCCTTCTATTCCCAGAGATAGATACAAGTCCTTAAATATATCTGATATTGTAGAAGAGGATGAAGAGGCATTCTTCAGAGGTTCGTCTCACAGTCTCCTGGTAAATAAACAGGCTTGTGCAGTTCAAAATGGTATGTCAGAAAGCAGTGATGTAGACTTGGATTCTTCAAAATTTGGATTTCTTCATGGGGCTGCCTCAATGACTGTGAAAGATGGCCCACAACTGAAGGACTCTTGTCTTAGTGCTGAACCAATGAAACAAGATATCTCTGGCCTTTCTTGGGAAGGGCACTCTCTCTTGTGTGCTGACGTTTATCCCCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCCCCTGCTGCCAGTGTCAATAATAATGAGAGCTTTGAGATTTCTGGATCTGCATTGGGACCCCTTGGGTGTGATGAAGGAGAAATTGAAAGTGGGATGCAAAATATCCAGTTTGAGCCGCCGAAGGAATTGGAAGAAAAAAATCATAGTGTTTTCTTGTGCAGCTCTCCTGTCTCATTAGAGCCCTTGGGTTCAGGGGATTCTTCAGGAGCCAAAACCAATTCATTGTCCAAGAATATATTTCATCCGCAACTCTTGAGGTTAGAATCCAGACCAGAAGTGGACATCTCTAATCCTGCAGATGACAGAAGGGAGAATATATCTGAGGAGCATAATCAAAATGGACTAGTAAAGCATTTCACCAAGCTTACCTTGCAAAACCGGGATATGATGGAAGGTTCTTGGTTAGACAAGATTATATGGGAGGAGGTTGATAAACCTATGGTGAAACCGAAGCTAATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTGGATAGTAAGGATGGCAGACATCTCCGCCTGCATGCAGGGGCAATGATTTTAACTCGACCATCAAAAGCAAGCAATGGAGATTCTCCTGAGCTACCTGGACATGGAAATCAGCATGGATGGCGATCCATTGCTAATGATAAACATTATTCAAACAGGAAAACTTCCCAGCAACTGAAATCAAATTCTAAAAAACGCTCAGCTCATGGTGTAAAAGTTTTTCACTCTCAACCGGCACTGAAGCTTCAGACAATGAAATTGAAACTGAGCAACAAAGATATTGCCAATTTTCACCGACCAAGAGCTTTATGGTATCCTCATGACATTGAGATGGCCGTCAAAGAACAAGGGAAACTGCCAACACAAGGACCGATGAAAATTATCATGAAGAGCTTGGGTGGCAAGGGGAGTAAATTGCATGTTGAAGCTGAAGAAACTCTTTCTTCTGTCAAAGCAAAAGCATCTAAAAAGCTAGATTTTAAACCATTGGAAACTGTGAAAATATTTTATCTTGGGAAGGAACTTGAAGATGAGAAATCACTTGCTGCACAAAATGTTCGACCAAATTCATTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCTAGGGCACAAAGGGTTCCTGGTGAGAACAAATCCTTACGTCCACCCGGGGCATTCAAGAAAAAGTCTGATCTATCTGTTAAGGATGGACATGTTTTTCTAATGGAGTACTGTGAGGAAAGACCTTTATTATTGAGCAATGCTGGAATGGGTGCCAGACTTTGTACATACTATCAAAAATGTTCTCCAGATGATCAAGGTGGCTCTTTATTACGCACCACAGATAGTAGCTTGGGGCATGTGATTTCACTGGACCCTGCTGATAAATCTCCATTTCTTGGAGATTTAAAACCTGGCTGCAGTCAGTCATCACTGGAGACAAACATGTATAGAGCACCCATATTTCCTCATAAAGTGCCATTAACAGACTACCTGCTAGTTCGGTCATCGAAGGGAAAGCTATCATTAAGACGGATTGATAAAATCAACGTTGTTGGACAGCAGGAGCCTCTTATGGAGGTATTGTCACCTGGAAGTAAGAATCTTCAGACGTATATGATGAACAGGTTACTGGTACACATGTGCCGTGAATTTCAAGCTGCAGAGAAGCGGCACTTGCAGCCACACATTCGTGTTGATGAGCTGCTGTCGCAGTTTCCTTACCTATCAGAAGCTTCTTTTCGCAAGAAATTTAAGGAATTTGCTGTTTTACAGAAGGGAACAAATGGACAGTCAATTTTGGCTAAAAAGCGAAATTTTCGCATGTGGTCAGAGGATGAACTGAGAAAAATGGTGACACCAGAGCTGGTTTGTGCTTATGAAAGCATGCAAGCTGGTCTCTACCGTCTTAAACATTTAGGAATAACTGAAACCCATCCTACTAATATATCTTCTGCTATGAGTCGGCTTCCTGATGAAGCAATTGCTCTGGCTGCTGCGTCGCACATTGAGAGGGAGCTGCAAATCACTCCATGGAACCTGAGTAGCAATTTTGTTGCCTGCACAAGCCAGGGAAAGGAAAATATTGAGCGATTGGAAATTACTGGTGTTGGTGATCCATCTGGGCGTGGCTTGGGTTTCAGCTATGCTCGGGCTCCTCCAAAGGCACCAGTGTCAAGCGCAGTGGTGAAGAAGAAAACAGCTGCTGCCCGGGGTGGTTCCACTGTTACTGGAACAGATGCTGACCTACGCAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTCAAGTTCAATGTTCCTGAGGAAGTCATTGCGAAACAAACCAGGTGGCATCGAATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCGGCATCTGGAGTTAAGGTTGACCCAACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGGGAGAAGTGCCAGGAGATTTGGGATCGGCAAGTTCAAAGTCTTTCAGCTGTGAATGGTGATGAAAATGAGAGTGATTCTGAAGGAAACAGTGATCTAGATTCTTTTGCTGGTGATCTAGAAAATTTACTTGATGCCGAGGAGTGTGAAGAGGGAGAAGAGGGTACCAATGATTTTAAACGTGACAAGGGTGATGGTGTTAAGGGTCTTAAAATGAGGAGACGTCCAACCTTAGCCCAGGCAGAGGAGGAAATAGAAGATGAAGCGGCTGAGGCCGCTGAACTATGCAGACTACTCATGGATGAGGATGAAGATGAGAGGAAGAAAAAGAAAAAGACTAAATTTGTTGTCGAGGAAGCAGGAGTAATTCCAAAACTACATTCAAGATTTGTCTTTGACAATACAGATCAGATGAAGCAAATAACTAATCCTGTGCAACTAGATGGAGCCAATACATTGAAAGAAAATACAGTTACAAATCTCAGGGAGGAGGATGGCATTTCTACTAAAAAAAGCAAATCAGTGAAGGTTAATAAACCTAAGAAGACTGACCTTTCACCTATTAGTGTGGCAAATAAGAAAATAAAGTTAAATATTGGGGAACCACCCAAGGTATTCAAGGAGAAAAAGCCATCAAGGGAAAGTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGAGAACAAACAAAAACTGTCCAAAATACGGTGAAGATCCAGAAGCACAGCCTGAATCTACAGACATCGAAAAAACGGGCGGAAAATCAAGCTTGTTGGATGCTTCTGGTCAGTCCCACCATAAAGCTGTTTCTAAGAAGCTTATTTCAAGAAGCTCATCAAAAATTGCTCTGGCTGAAGCTTCTGAGGGAGAAAAAACTAGTTTGAAGACTAAAGTTCTTCCAGTGAAGTTCAAATGCAGCTCCACTGAAAAACCTGCTATTGAAGCCCCACAGAGCTCTGACAAACCAGTCACTTCTGATTCAGAAACTGCCAAGTCTGCTAAGATAAGTAGAATCTTAATTCCCAACAAAGTGAAGTCAGATGATATGCAAGCTGAGTCTCGTAAGCATGGCATTGCCATACGTCCTCCAACTGATCCAAGTAGAAGTCAAGTTGATTCTCATAAGCCGTCAATTATAATTCGACCACCTGCAGAAACAGATAGGGAGCAGCCTCAAAAGAAAATTATTATAAAACGCACAAAGGATGTTATTGATCCGGATCAGTTCAGTCCTGGTGAAAACATGGGATTCGAGCACAGAAAAACGAAGAGAATTGTTGAATTGTCAAATTTTGAGAAGCACAGAAAACATGAGACCATGTATAGAGCTGAAGCCTCACTGGCAAAACAGAAAAGTAAAGAGGATAGAAGATGGTGGGATGAGCAAGAGAAAAGGAGAAAAGAAGAAAGGCTCCGGGAACGGGCAAGGAGGCTTCATGACGAAGAAATGAGGATGCTAAAAGAGCAAGAAAGGTTAGCTGAGTTAAAAAGATACGAAGAAGATATTAGGAGAGAGAGGGAGGAGGAAGAACGGCAGAAAGCAAAGAAGAAGAAGAAGAAAAAGGCCGATTTTAGAGACGGGTATATAGATGACCACAGAACAAGATTTAATAACAGAGTATTAGAAAGAGAACGGAGTGGAAAAAGATCTGTTGTTGAGTTGGGAAGGTATGCAGCTGAATATACACCGCCACCAAAACGACGCCGAGGTGGAGGGGGAGAGGTTGGTTTGGCAAATATTTTGGAGCGCATTCTCGATGCACTCAAAGGACGTTATGACCTGTCATACCTTTTCTTGAAACCCGTGTCCAAGAAAGAAGCTCCCGACTACCTGGACATTATAGAGAGGCCTATGGATCTTTCAAGAATCAGGGAGAGGGTGAGGAATATGGAGTACAAAAGCCGGGAAGATTTCAGGCACGATGTGTGGCAGATTGCGCATAATGCCCACACATATAACGATGGGAGAAACCCAGGAATTCCTCCTCTTGCTGATAAGCTTTTAGAGCTTTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTGAAGCTGAAGCTGGTATTGAAACTAGGGATTTCTAG 5661 0.428 MGYDSDSPSQDGRDEDDDEEYEEAGKGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLSALAEKLGASLTDIDLSGKSPQTPPDIVEQDYGEKAEDAVDYEDIDEEYDGPETEAASEAEHLLSKKEFFSVGASLEALKSRSSVFDDENYDEESEKEQDLVNDASEVNNISSTGELVEPLVDASKGEKSQELESHDGSQQSEDLDTNLQNRQEEGPEVLKVSAPLPVLCVEDGMVILRFSEIFGIHEPLRKGGRREQRPSIPRDRYKSLNISDIVEEDEEAFFRGSSHSLLVNKQACAVQNGMSESSDVDLDSSKFGFLHGAASMTVKDGPQLKDSCLSAEPMKQDISGLSWEGHSLLCADVYPLDQQDWEDEIIWGNSPAASVNNNESFEISGSALGPLGCDEGEIESGMQNIQFEPPKELEEKNHSVFLCSSPVSLEPLGSGDSSGAKTNSLSKNIFHPQLLRLESRPEVDISNPADDRRENISEEHNQNGLVKHFTKLTLQNRDMMEGSWLDKIIWEEVDKPMVKPKLIFDLQDDQMHFEVLDSKDGRHLRLHAGAMILTRPSKASNGDSPELPGHGNQHGWRSIANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDIEMAVKEQGKLPTQGPMKIIMKSLGGKGSKLHVEAEETLSSVKAKASKKLDFKPLETVKIFYLGKELEDEKSLAAQNVRPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGARLCTYYQKCSPDDQGGSLLRTTDSSLGHVISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLQPHIRVDELLSQFPYLSEASFRKKFKEFAVLQKGTNGQSILAKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERLEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKTAAARGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDFKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDEDEDERKKKKKTKFVVEEAGVIPKLHSRFVFDNTDQMKQITNPVQLDGANTLKENTVTNLREEDGISTKKSKSVKVNKPKKTDLSPISVANKKIKLNIGEPPKVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDPEAQPESTDIEKTGGKSSLLDASGQSHHKAVSKKLISRSSSKIALAEASEGEKTSLKTKVLPVKFKCSSTEKPAIEAPQSSDKPVTSDSETAKSAKISRILIPNKVKSDDMQAESRKHGIAIRPPTDPSRSQVDSHKPSIIIRPPAETDREQPQKKIIIKRTKDVIDPDQFSPGENMGFEHRKTKRIVELSNFEKHRKHETMYRAEASLAKQKSKEDRRWWDEQEKRRKEERLRERARRLHDEEMRMLKEQERLAELKRYEEDIRREREEEERQKAKKKKKKKADFRDGYIDDHRTRFNNRVLERERSGKRSVVELGRYAAEYTPPPKRRRGGGGEVGLANILERILDALKGRYDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDVWQIAHNAHTYNDGRNPGIPPLADKLLELCDYLLNENDDSLTEAEAGIETRDF 1886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2426g00047 1886 ProSiteProfiles Ubiquitin domain profile. 667 737 IPR000626 GO:0005515
Pral2426g00047 1886 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1885 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 592 606 - -
Pral2426g00047 1886 SMART bromo_6 1762 1872 IPR001487 GO:0005515
Pral2426g00047 1886 CDD Bromodomain 1772 1867 - -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1 29 - -
Pral2426g00047 1886 SUPERFAMILY Bromodomain 1753 1875 IPR036427 GO:0005515
Pral2426g00047 1886 Pfam Bromodomain 1773 1848 IPR001487 GO:0005515
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1440 1455 - -
Pral2426g00047 1886 Gene3D - 651 739 - -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1245 1273 - -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1503 1524 - -
Pral2426g00047 1886 Gene3D - 1638 1885 IPR036427 GO:0005515
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 562 613 - -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1539 1553 - -
Pral2426g00047 1886 Coils Coil 1269 1293 - -
Pral2426g00047 1886 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Pral2426g00047 1886 SUPERFAMILY Ubiquitin-like 637 737 IPR029071 -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1695 1716 - -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 179 198 - -
Pral2426g00047 1886 Pfam TATA box-binding protein binding 17 65 IPR009067 -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1578 1598 - -
Pral2426g00047 1886 FunFam Transcription initiation factor TFIID subunit 1 649 739 - -
Pral2426g00047 1886 Pfam Protein of unknown function (DUF3591) 586 1153 IPR022591 -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1420 1485 - -
Pral2426g00047 1886 Coils Coil 1653 1714 - -
Pral2426g00047 1886 SMART ubq_7 667 739 IPR000626 GO:0005515
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 93 111 - -
Pral2426g00047 1886 ProSiteProfiles Bromodomain profile. 1782 1852 IPR001487 GO:0005515
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1208 1227 - -
Pral2426g00047 1886 Gene3D - 21 70 IPR036741 -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1240 1275 - -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 68 117 - -
Pral2426g00047 1886 ProSitePatterns Bromodomain signature. 1787 1844 IPR018359 -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1499 1613 - -
Pral2426g00047 1886 CDD Ubl_TAFs_like 667 738 - -
Pral2426g00047 1886 PRINTS Bromodomain signature 1785 1798 IPR001487 GO:0005515
Pral2426g00047 1886 PRINTS Bromodomain signature 1833 1852 IPR001487 GO:0005515
Pral2426g00047 1886 PRINTS Bromodomain signature 1815 1833 IPR001487 GO:0005515
Pral2426g00047 1886 PRINTS Bromodomain signature 1799 1815 IPR001487 GO:0005515
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 142 202 - -
Pral2426g00047 1886 MobiDBLite consensus disorder prediction 1635 1666 - -
Pral2426g00047 1886 Pfam Ubiquitin family 671 739 IPR000626 GO:0005515
Pral2426g00047 1886 Pfam Zinc knuckle 1409 1429 IPR041670 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2426g00047 Pral-Chr2426 219826 236566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2426g00047 667 737 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.845 1.58e-08 53.9