Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2426g00046 ATGGGGTATGATTCCGATAGCCCCTCACAAGATGGGAGGGATGAAGATGATGATGAAGAATATGAGGAGGCTGGAAAAGGCAACCGTTTGCTGGGGTTCATGTTTGGAAATGTTGATAATTCGGGTGATCTTGATGCTGATTACCTTGATGAGGATGCAAAGGAGCATCTTTCTGCACTTGCTGAGAAGCTGGGTGCTTCCCTGACAGATATAGATTTGTCAGGAAAATCGCCACAAACACCACCTGACATTGTCGAACAAGACTATGGTGAGAAAGCTGAAGATGCGGTTGATTATGAAGATATTGATGAAGAATATGATGGTCCAGAGACAGAAGCTGCAAGTGAAGCGGAACATCTATTGTCCAAAAAGGAATTTTTCTCTGTTGGAGCCTCTCTTGAAGCCTTGAAATCCAGATCTTCTGTCTTTGATGATGAAAATTATGACGAGGAATCTGAAAAGGAGCAAGACTTGGTGAATGACGCTTCTGAAGTTAATAACATCTCTTCAACTGAGCTGGTAGAGCCTCTTGTTGATGCATCTAAAGGAGAGAAAAGTCAAGAACTTGAATCACATGATGGCTCACAGCAGTCTGAAGACCTGGACACCAACTTGCAAAATCGCCAGGAGGAAGGGCCTGAGGTTTTGAAAGTTTCTGCTCCATTGCCTGTTCTATGTGTGGAAGATGGGATGGTCATTTTAAGGTTCTCTGAGATTTTTGGTATTCATGAACCTTTGAGAAAGGGAGGGAGGAGAGAGCAACGGCCTTCTATTCCCAGAGATAGATACAAGTCCTTAAATATATCTGATATTGTAGAAGAGGATGAAGAGGCATTCTTCAGAGGTTCGTCTCACAGTCTCCTGGTAAATAAACAGGCTTGTGCAGTTCAAAATGGTATGTCAGAAAGCAGTGATGTAGACTTGGATTCTTCAAAATTTGGATTTCTTCATGGGGCTGCCTCAATGACTGTGAAAGATGGCCCACAACTGAAGGACTCTTGTCTTAGTGCTGAACCAATGAAACAAGATATCTCTGGCCTTTCTTGGGAAGGGCACTCTCTCTTGTGTGCTGACGTTTATCCCCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCCCCTGCTGCCAGTGTCAATAATAATGAGAGCTTTGAGATTTCTGGATCTGCATTGGGACCCCTTGGGTGTGATGAAGGAGAAATTGAAAGTGGGATGCAAAATATCCAGTTTGAGCCGCCGAAGGAATTGGAAGAAAAAAATCATAGTGTTTTCTTGTGCAGCTCTCCTGTCTCATTAGAGCCCTTGGGTTCAGGGGATTCTTCAGGAGCCAAAACCAATTCATTGTCCAAGAATATATTTCATCCGCAACTCTTGAGGTTAGAATCCAGACCAGAAGTGGACATCTCTAATCCTGCAGATGACAGAAGGGAGAATATATCTGAGGAGCATAATCAAAATGGACTAGTAAAGCATTTCACCAAGCTTACCTTGCAAAACCGGGATATGATGGAAGGTTCTTGGTTAGACAAGATTATATGGGAGGAGGTTGATAAACCTATGGTGAAACCGAAGCTAATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTGGATAGTAAGGATGGCAGACATCTCCGCCTGCATGCAGGGGCAATGATTTTAACTCGACCATCAAAAGCAAGCAATGGAGATTCTCCTGAGCTACCTGGACATGGAAATCAGCATGGATGGCGATCCATTGCTAATGATAAACATTATTCAAACAGGAAAACTTCCCAGCAACTGAAATCAAATTCTAAAAAACGCTCAGCTCATGGTGTAAAAGTTTTTCACTCTCAACCGGCACTGAAGCTTCAGACAATGAAATTGAAACTGAGCAACAAAGATATTGCCAATTTTCACCGACCAAGAGCTTTATGGTATCCTCATGACATTGAGATGGCCGTCAAAGAACAAGGGAAACTGCCAACACAAGGACCGATGAAAATTATCATGAAGAGCTTGGGTGGCAAGGGGAGTAAATTGCATGTTGAAGCTGAAGAAACTCTTTCTTCTGTCAAAGCAAAAGCATCTAAAAAGCTAGATTTTAAACCATTGGAAACTGTGAAAATATTTTATCTTGGGAAGGAACTTGAAGATGAGAAATCACTTGCTGCACAAAATGTTCGACCAAATTCATTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCTAGGGCACAAAGGGTTCCTGGTGAGAACAAATCCTTACGTCCACCCGGGGCATTCAAGAAAAAGTCTGATCTATCTGTTAAGGATGGACATGTTTTTCTAATGGAGTACTGTGAGGAAAGACCTTTATTATTGAGCAATGCTGGAATGGGTGCCAGACTTTGTACATACTATCAAAAATGTTCTCCAGATGATCAAGGTGGCTCTTTATTACGCACCACAGATAGTAGCTTGGGGCATGTGATTTCACTGGACCCTGCTGATAAATCTCCATTTCTTGGAGATTTAAAACCTGGCTGCAGTCAGTCATCACTGGAGACAAACATGTATAGAGCACCCATATTTCCTCATAAAGTGCCATTAACAGACTACCTGCTAGTTCGGTCATCGAAGGGAAAGCTATCATTAAGACGGATTGATAAAATCAACGTTGTTGGACAGCAGGAGCCTCTTATGGAGGTATTGTCACCTGGAAGTAAGAATCTTCAGACGTATATGATGAACAGGTTACTGGTACACATGTGCCGTGAATTTCAAGCTGCAGAGAAGCGGCACTTGCAGCCACACATTCGTGTTGATGAGCTGCTGTCGCAGTTTCCTTACCTATCAGAAGCTTCTTTTCGCAAGAAATTTAAGGAATTTGCTGTTTTACAGAAGGGAACAAATGGACAGTCAATTTTGGCTAAAAAGCGAAATTTTCGCATGTGGTCAGAGGATGAACTGAGAAAAATGGTGACACCAGAGCTGGTTTGTGCTTATGAAAGCATGCAAGCTGGTCTCTACCGTCTTAAACATTTAGGAATAACTGAAACCCATCCTACTAATATATCTTCTGCTATGAGTCGGCTTCCTGATGAAGCAATTGCTCTGGCTGCTGCGTCGCACATTGAGAGGGAGCTGCAAATCACTCCATGGAACCTGAGTAGCAATTTTGTTGCCTGCACAAGCCAGGGAAAGGAAAATATTGAGCGATTGGAAATTACTGGTGTTGGTGATCCATCTGGGCGTGGCTTGGGTTTCAGCTATGCTCGGGCTCCTCCAAAGGCACCAGTGTCAAGCGCAGTGGTGAAGAAGAAAACAGCTGCTGCCCGGGGTGGTTCCACTGTTACTGGAACAGATGCTGACCTACGCAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTCAAGTTCAATGTTCCTGAGGAAGTCATTGCGAAACAAACCAGGTGGCATCGAATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCGGCATCTGGAGTTAAGGTTGACCCAACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGGGAGAAGTGCCAGGAGATTTGGGATCGGCAAGTTCAAAGTCTTTCAGCTGTGAATGGTGATGAAAATGAGAGTGATTCTGAAGGAAACAGTGATCTAGATTCTTTTGCTGGTGATCTAGAAAATTTACTTGATGCCGAGGAGTGTGAAGAGGGAGAAGAGGGTACCAATGATTTTAAACGTGACAAGGGTGATGGTGTTAAGGGTCTTAAAATGAGGAGACGTCCAACCTTAGCCCAGGCAGAGGAGGAAATAGAAGATGAAGCGGCTGAGGCCGCTGAACTATGCAGACTACTCATGGATGAGGATGAAGATGAGAGGAAGAAAAAGAAAAAGACTAAATTTGTTGTCGAGGAAGCAGGAGTAATTCCAAAACTACATTCAAGATTTGTCTTTGACAATACAGATCAGATGAAGCAAATAACTAATCCTGTGCAACTAGATGGAGCCAATACATTGAAAGAAAATACAGTTACAAATCTCAGGGAGGAGGATGGCATTTCTACTAAAAAAAGCAAATCAGTGAAGGTTAATAAACCTAAGAAGACTGACCTTTCACCTATTAGTGTGGCAAATAAGAAAATAAAGTTAAATATTGGGGAACCACCCAAGGTATTCAAGGAGAAAAAGCCATCAAGGGAAAGTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGAGAACAAACAAAAACTGTCCAAAATACGGTGAAGATCCAGAAGCACAGCCTGAATCTACAGACATCGAAAAAACGGGCGGAAAATCAAGCTTGTTGGATGCTTCTGGTCAGTCCCACCATAAAGCTGTTTCTAAGAAGCTTATTTCAAGAAGCTCATCAAAAATTGCTCTGGCTGAAGCTTCTGAGGGAGAAAAAACTAGTTTGAAGACTAAAGTTCTTCCAGTGAAGTTCAAATGCAGCTCCACTGAAAAACCTGCTATTGAAGCCCCACAGAGCTCTGACAAACCAGTCACTTCTGATTCAGAAACTGCCAAGTCTGCTAAGATAAGTAGAATCTTAATTCCCAACAAAGTGAAGTCAGATGATATGCAAGCTGAGTCTCGTAAGCATGGCATTGCCATACGTCCTCCAACTGATCCAAGTAGAAGTCAAGTTGATTCTCATAAGCCGTCAATTATAATTCGACCACCTGCAGAAACAGATAGGGAGCAGCCTCAAAAGAAAATTATTATAAAACGCACAAAGGATGTTATTGATCCGGATCAGTTCAGTCCTGGTGAAAACATGGGATTCGAGCACAGAAAAACGAAGAGAATTGTTGAATTGTCAAATTTTGAGAAGCACAGAAAACATGAGACCATGTATAGAGCTGAAGCCTCACTGGCAAAACAGAAAAGTAAAGAGGATAGAAGATGGTGGGATGAGCAAGAGAAAAGGAGAAAAGAAGAAAGGCTCCGGGAACGGGCAAGGAGGCTTCATGACGAAGAAATGAGGATGCTAAAAGAGCAAGAAAGGTTAGCTGAGTTAAAAAGATACGAAGAAGATATTAGGAGAGAGAGGGAGGAGGAAGAACGGCAGAAAGCAAAGAAGAAGAAGAAGAAAAAGGCCGATTTTAGAGACGGGTATATAGATGACCACAGAACAAGATTTAATAACAGAGTATTAGAAAGAGAACGGAGTGGAAAAAGATCTGTTGTTGAGTTGGGAAGGTATGCAGCTGAATATACACCGCCACCAAAACGACGCCGAGGTGGAGGGGGAGAGGTTGGTTTGGCAAATATTTTGGAGCGCATTCTCGATGCACTCAAAGGACGTTATGACCTGTCATACCTTTTCTTGAAACCCGTGTCCAAGAAAGAAGCTCCCGACTACCTGGACATTATAGAGAGGCCTATGGATCTTTCAAGAATCAGGGAGAGGGTGAGGAATATGGAGTACAAAAGCCGGGAAGATTTCAGGCACGATGTGTGGCAGATTGCGCATAATGCCCACACATATAACGATGGGAGAAACCCAGGAATTCCTCCTCTTGCTGATAAGCTTTTAGAGCTTTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTGAAGCTGAAGCTGGTATTGAAACTAGGGATTTCTAG 5658 0.4277 MGYDSDSPSQDGRDEDDDEEYEEAGKGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLSALAEKLGASLTDIDLSGKSPQTPPDIVEQDYGEKAEDAVDYEDIDEEYDGPETEAASEAEHLLSKKEFFSVGASLEALKSRSSVFDDENYDEESEKEQDLVNDASEVNNISSTELVEPLVDASKGEKSQELESHDGSQQSEDLDTNLQNRQEEGPEVLKVSAPLPVLCVEDGMVILRFSEIFGIHEPLRKGGRREQRPSIPRDRYKSLNISDIVEEDEEAFFRGSSHSLLVNKQACAVQNGMSESSDVDLDSSKFGFLHGAASMTVKDGPQLKDSCLSAEPMKQDISGLSWEGHSLLCADVYPLDQQDWEDEIIWGNSPAASVNNNESFEISGSALGPLGCDEGEIESGMQNIQFEPPKELEEKNHSVFLCSSPVSLEPLGSGDSSGAKTNSLSKNIFHPQLLRLESRPEVDISNPADDRRENISEEHNQNGLVKHFTKLTLQNRDMMEGSWLDKIIWEEVDKPMVKPKLIFDLQDDQMHFEVLDSKDGRHLRLHAGAMILTRPSKASNGDSPELPGHGNQHGWRSIANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDIEMAVKEQGKLPTQGPMKIIMKSLGGKGSKLHVEAEETLSSVKAKASKKLDFKPLETVKIFYLGKELEDEKSLAAQNVRPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGARLCTYYQKCSPDDQGGSLLRTTDSSLGHVISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLQPHIRVDELLSQFPYLSEASFRKKFKEFAVLQKGTNGQSILAKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERLEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKTAAARGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDFKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDEDEDERKKKKKTKFVVEEAGVIPKLHSRFVFDNTDQMKQITNPVQLDGANTLKENTVTNLREEDGISTKKSKSVKVNKPKKTDLSPISVANKKIKLNIGEPPKVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDPEAQPESTDIEKTGGKSSLLDASGQSHHKAVSKKLISRSSSKIALAEASEGEKTSLKTKVLPVKFKCSSTEKPAIEAPQSSDKPVTSDSETAKSAKISRILIPNKVKSDDMQAESRKHGIAIRPPTDPSRSQVDSHKPSIIIRPPAETDREQPQKKIIIKRTKDVIDPDQFSPGENMGFEHRKTKRIVELSNFEKHRKHETMYRAEASLAKQKSKEDRRWWDEQEKRRKEERLRERARRLHDEEMRMLKEQERLAELKRYEEDIRREREEEERQKAKKKKKKKADFRDGYIDDHRTRFNNRVLERERSGKRSVVELGRYAAEYTPPPKRRRGGGGEVGLANILERILDALKGRYDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDVWQIAHNAHTYNDGRNPGIPPLADKLLELCDYLLNENDDSLTEAEAGIETRDF 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2426g00046 1885 ProSitePatterns Bromodomain signature. 1786 1843 IPR018359 -
Pral2426g00046 1885 CDD Ubl_TAFs_like 666 737 - -
Pral2426g00046 1885 SMART ubq_7 666 738 IPR000626 GO:0005515
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1634 1665 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1207 1226 - -
Pral2426g00046 1885 ProSiteProfiles Ubiquitin domain profile. 666 736 IPR000626 GO:0005515
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1 29 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 142 201 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1498 1612 - -
Pral2426g00046 1885 Pfam Protein of unknown function (DUF3591) 585 1152 IPR022591 -
Pral2426g00046 1885 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1239 1274 - -
Pral2426g00046 1885 SUPERFAMILY Ubiquitin-like 636 736 IPR029071 -
Pral2426g00046 1885 Gene3D - 1637 1884 IPR036427 GO:0005515
Pral2426g00046 1885 Coils Coil 1652 1713 - -
Pral2426g00046 1885 SMART bromo_6 1761 1871 IPR001487 GO:0005515
Pral2426g00046 1885 PRINTS Bromodomain signature 1832 1851 IPR001487 GO:0005515
Pral2426g00046 1885 PRINTS Bromodomain signature 1784 1797 IPR001487 GO:0005515
Pral2426g00046 1885 PRINTS Bromodomain signature 1798 1814 IPR001487 GO:0005515
Pral2426g00046 1885 PRINTS Bromodomain signature 1814 1832 IPR001487 GO:0005515
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1694 1715 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 178 197 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1439 1454 - -
Pral2426g00046 1885 ProSiteProfiles Bromodomain profile. 1781 1851 IPR001487 GO:0005515
Pral2426g00046 1885 Gene3D - 650 738 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1502 1523 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 93 111 - -
Pral2426g00046 1885 FunFam Transcription initiation factor TFIID subunit 1 648 738 - -
Pral2426g00046 1885 SUPERFAMILY Bromodomain 1752 1874 IPR036427 GO:0005515
Pral2426g00046 1885 Pfam TATA box-binding protein binding 17 65 IPR009067 -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 591 605 - -
Pral2426g00046 1885 CDD Bromodomain 1771 1866 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1538 1552 - -
Pral2426g00046 1885 Coils Coil 1268 1292 - -
Pral2426g00046 1885 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1884 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Pral2426g00046 1885 Pfam Bromodomain 1772 1847 IPR001487 GO:0005515
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1577 1597 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 68 117 - -
Pral2426g00046 1885 Pfam Zinc knuckle 1408 1428 IPR041670 -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1244 1272 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 1419 1484 - -
Pral2426g00046 1885 MobiDBLite consensus disorder prediction 561 612 - -
Pral2426g00046 1885 Pfam Ubiquitin family 670 738 IPR000626 GO:0005515
Pral2426g00046 1885 Gene3D - 21 70 IPR036741 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2426g00046 Pral-Chr2426 219826 236566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2426g00046 666 736 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.845 1.55e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2426g00046 K03125 - gmx:100780733 2716.03