Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2426g00041 ATGGAGCCCAACGACTTGTTACAGGAACTTCTAAATGTAGAGGTTGAGATTCAAGATGTTGAAGATCAAATAAGGGCATTGATTGAAAGACAAGAGCAGTTGCATGAGAGAAAATCGGAGCTCAAGGCTATACTGGAAGCATGTGAGGAATCTGGGAACCAGGTCAGTGACGGTGCTCCAAGTGCCGCCGTGGAAAATTGGTCTGGGCCATTTGAATGGGATTCTGAAGCAGATGATGTCAGGCTGAATATTTTTGGCATTTCTACATATCGTGCAAATCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGGGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCCGCTGTTCTCCGTGATGGAATTGCTCTTGTTGTCAGTCCTTTGCTTTCTTTAATTCAGGATCAGGTTATGGGTTTGACTGCTCTAGGGATCCCAGCATACATGTTGACCTCAACAACAAGTAAGGAAGATGAGAAGTTCATATACAAGGCTCTGGATAAGGGTGAGGGAGATCTTAAAGTATTGTACGTCACACCAGAAAAGATATCAAAGAGCAAGAGATTTATGTCGAAACTAGAAAAGTGTCATCACATGGGTCGTCTCTCTCTAATTTCAGTAGATGAGGCACATTGCTGTAGCCAATGGGGTCATGACTTTAGACCTGACTACAAGAACCTTGGTATTCTCAAGACTCAATTTCCTAATGTTCCATTAGTTGCTTTGACTGCAACTGCTACTCATAGAGTCCAAAATGATCTGATGGAAATGTTGCACATTCCAAGATGTGTCAAATTCGTCAGCACAGTCAACAGACCAAACCTGTTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGCGGTTATTGATGAAATTGCTGGATTCATTCAAGAATCTTATCCAAATGAGGAATCTGGGATAGTTTATTGTTTCTCCAGGAAAGAATGTGAACAGGTTGCAACGGAATTAAGGGAGAGGGGAATTTCAGCAGACTATTACCATGCAGATATGGATGTACATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATGGCAAGTTGCAGGTCATTGTTGGTACGGTGGCATTTGGCATGGGAATCAACAAACCAGATGTCAGATTCGTCATCCATCACAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCAGAGATGGACTCCCATCTGAATGTGTTCTCTACTTTAGACCTGGTGATGTGCCCCGACAGAGTTCAATGGTTTTCTACGAAAACACAGGACTGCAGAATTTGTATGACATAGTACGATATTGTCAGTCCAAAAGAAAATGTCGCCGCGGTGCCATTTTCCGGCACTTTGCTGAGCCACTGCAAGACTGCAATGGGATGTGTGACAATTGCGCATTCCCAAGTGAGGTGAAAGAAGTGGACGTCTCCAGCCATGCAAAGCTGATGGTTTCTTTGTTGCAAGATATGCAAGAAAATGATCAGCGATTAACAATGTTACAGTTGGTTGACAAAATGAAAATTAAGCAGAAGGAACTAGAAAGAAGAATTTCAGCATACGGCATATTCAACAAATGCTTATGTTGCTGTGGGACCATTGGCCAAGCAAATATTGCTAGGAAAGAAGACAGTCAAGATTGA 1671 0.4273 MEPNDLLQELLNVEVEIQDVEDQIRALIERQEQLHERKSELKAILEACEESGNQVSDGAPSAAVENWSGPFEWDSEADDVRLNIFGISTYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKEDEKFIYKALDKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHMGRLSLISVDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATHRVQNDLMEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKAVIDEIAGFIQESYPNEESGIVYCFSRKECEQVATELRERGISADYYHADMDVHAREKVHMRWSNGKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKRKCRRGAIFRHFAEPLQDCNGMCDNCAFPSEVKEVDVSSHAKLMVSLLQDMQENDQRLTMLQLVDKMKIKQKELERRISAYGIFNKCLCCCGTIGQANIARKEDSQD 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2426g00041 556 SMART ultradead3 86 289 IPR014001 -
Pral2426g00041 556 CDD SF2_C_RecQ 281 417 - -
Pral2426g00041 556 SMART helicmild6 327 408 IPR001650 -
Pral2426g00041 556 Gene3D - 481 549 IPR036388 -
Pral2426g00041 556 Pfam Helicase conserved C-terminal domain 312 407 IPR001650 -
Pral2426g00041 556 Pfam RecQ zinc-binding 420 476 IPR032284 -
Pral2426g00041 556 Coils Coil 10 51 - -
Pral2426g00041 556 NCBIfam RecQ family ATP-dependent DNA helicase 83 509 IPR004589 GO:0004386|GO:0006310
Pral2426g00041 556 CDD DEXHc_RecQ1 72 280 - -
Pral2426g00041 556 Gene3D - 281 477 IPR027417 -
Pral2426g00041 556 FunFam ATP-dependent DNA helicase 47 280 - -
Pral2426g00041 556 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Pral2426g00041 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 424 IPR027417 -
Pral2426g00041 556 Gene3D - 47 280 IPR027417 -
Pral2426g00041 556 PANTHER DNA HELICASE RECQ FAMILY MEMBER 68 525 - -
Pral2426g00041 556 FunFam ATP-dependent DNA helicase 281 477 - -
Pral2426g00041 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Pral2426g00041 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 447 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2426g00041 Pral-Chr2426 183357 193553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2426g00041 85 422 Eukaryotic Initiation Factors Gene Family AT3G19760 19.492 3.50e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2426g00041 K10899 - gmx:100817635 939.102