Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2426g00016 ATGGGATCTAGTGGTAGCAAAGGCACTTCCTCTTGCAGTTCGTCGTCATCTTCCGGCAGTTTCCGGAAGGTTCGATCTAAGAAAGGACATAGAGGATTTCAGTCGTATTGTCTGGGAACAACCTCTGGATCTCATGACGCACAGAATAAAACAAATGGCAATGGTGTTACATACAACTGTTACACTGGGACGCGCTCAAATGAGATGAAATCAAAGTCTTTTAGAGATGATAAAAGGAAAACATCTGATGACATGCCTTGCATGCCTTCCAACATTGACCTTAGTGAGTGGGATCAAACAAGCATCTCCAGTAATTCCTCCAGAACTCGTAGCCGATCTACACGTGCTTCTTCAACTGGTGGTCGATTCCTTTCTCGGTTTAGCCTTATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACAACCAGTTTAGGGTCATCAAGGTCCTGCCATGCTTCTTCTACAACTATGTCAATATTCAATAATGAAGATGATCGGAGTCTGCATCCAGGACCCACTGGCAGCTTGGTTAATAGAAATGAAACTCGACAATCAGCAGATTCATCTGGCAACTTGCAGGGTAATCCCTCATCTTCTTCTAGACAGAATGCGGTTAGAGATGGAAATGGTTCATGTGAAGGGCTGGATCTAAACTTGTTTTCTTCAAGAATTCATGCTGAGACTGAAAATATTGAGGGTCGACAAAATGGAGCTCGAGAACCTGTGGAACGGAATTTTCGGTACAGCCGGACTCTAAGTGTTGGGAGGCTTCGTAATAGAGTTCTTCGCCAATCAGCTTTCTCTGATGTCAGCTTTTGCCCCCGGCAACAAGAGAGAGAAGCAAGGGATACTAGGGAGGATAATGAAAGACAAGCGGGGGAGGGAGATTCAAGAGTATTACCATCTTTTAGTAATGCTATAAATTCTTCTTCTATGTCTGGTTATCCTCCATCCAGTATTTCTAACTCCTTATTCAACATCCAAGACTATGAGGTTGAGAATTCGCGGTCAAGAGAAACTAGGTACCAAGATCTGCTGGAACACAGATCCAACTTCCTTGAACGGAGAAGAAGAATAAGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTATCTGGACATGACAGATCTTGTATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATTGGTAGTCGTGATACTAGTTCAATTGATGATACCGGTACTAGAGCTAGCATATCAAGAATTGTAATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGCGGTTTTATCTTCCCGCCCTTCTGTGTCTTCCATTGGATCTGTTCCTGCGCCTAATGATGTTGTGGAGTCTTTGCCGGTCAAAACATACACAAAGTTGCATAAACATCAAGAGGATGCTGCCCAATGCTACATATGCCTGGTGGAGTATGAGGATGGAGACAGCATCCGTGAGCTGCCTTGCCATCACCAATTTCATAGAACATGCATAGACAAGTGGCTTAAGGAAATTCACAGGGTATGTCCACTATGTCGGAGGGACATCTGCATATCTGATTCACTGTCAATGGAGAACTAA 1605 0.4374 MGSSGSKGTSSCSSSSSSGSFRKVRSKKGHRGFQSYCLGTTSGSHDAQNKTNGNGVTYNCYTGTRSNEMKSKSFRDDKRKTSDDMPCMPSNIDLSEWDQTSISSNSSRTRSRSTRASSTGGRFLSRFSLIPGNISFRLSRTTSLGSSRSCHASSTTMSIFNNEDDRSLHPGPTGSLVNRNETRQSADSSGNLQGNPSSSSRQNAVRDGNGSCEGLDLNLFSSRIHAETENIEGRQNGAREPVERNFRYSRTLSVGRLRNRVLRQSAFSDVSFCPRQQEREARDTREDNERQAGEGDSRVLPSFSNAINSSSMSGYPPSSISNSLFNIQDYEVENSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRIGSRDTSSIDDTGTRASISRIVMLAEALFEVLDEIHQQSAVLSSRPSVSSIGSVPAPNDVVESLPVKTYTKLHKHQEDAAQCYICLVEYEDGDSIRELPCHHQFHRTCIDKWLKEIHRVCPLCRRDICISDSLSMEN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2426g00016 534 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 533 - -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 1 22 - -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 144 208 - -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 69 120 - -
Pral2426g00016 534 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Pral2426g00016 534 SUPERFAMILY RING/U-box 457 527 - -
Pral2426g00016 534 SMART ring_2 479 520 IPR001841 -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 273 302 - -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 144 163 - -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 69 84 - -
Pral2426g00016 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 526 IPR013083 -
Pral2426g00016 534 FunFam Putative RING zinc finger domain superfamily protein 448 526 - -
Pral2426g00016 534 Pfam Ring finger domain 478 521 IPR001841 -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 173 207 - -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 1 30 - -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 93 120 - -
Pral2426g00016 534 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2426g00016 Pral-Chr2426 98804 104047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2426g00016 72 528 C3H Transcription Factor Family AT5G45290 50.317 4.01e-116 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2426g00016 - - gmx:100815830 658.677