Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2422g00005 ATGGCTTTGAAGTTTTCTCTTGTTCTGGTTCTGCTCGTAATATATTCGAGCGCAGTGGAGGCTGTTTCCAGCAACGACAATCAGAACTGTCTCAAGAAAAATGGTTCTTCTCTCGCTGCCATCAAAATGCCTGATCATCCAGGCCTCAATACGGCGTCTTCTTCTGCATATACTGACTGTAGCTTCTCAAAGTCTGAGAAATTTGGGCATTCAGGAATAACCACATCAGATGAAGATACTGGTGATGATTATGTAGCAACACCACAGAAACAATTGCTAAAGCTCGATCTGAAACGTCGACCTGTGACGGTGAGTGAAGATGCCGAGCCAAAAAAACCTGTGATTGATTTCACTATTCGGGACTTGACCAGAATCCAGACCCTTCATAGAAGGGTCAAGGAGAAGAAGAACCAAAACACTGTTTCAAGGCTGCAGGAAACACAGCTCAAATCAAAGCAGGCTGTTACTCCGGCGCCGGCACAGGCAGCTGTGCCGGAGTATTTCATAAATGCGTATCCCGGCCGGCTTGTGGCAACATTGGAATCAGGGGTCAGTCTTGGCTCTGGAGAGTACTTCATGGATGTGTTTGTTGGTACACCTCCAAAACATTTCTCTTTGATACTTGATACAGGCAGTGATCTTAACTGGATCCAATGCGTTCCTTGTTATGTTTGCTTTGAGCAAAGTGGACCTTACTATGATCCTAAGGATTCAAGCTCCTTCAAGAACATAAGCTGCCATGACAAAAGGTGCCAGTTAGTGTCATCCCCAGATCCACCTCAGGCTTGCAAGGCTGAGAAGCAGAGCTGTCCTTATTTCTACTGGTATGGGGATAGCTCCAATACAACTGGGGATTTTGCTCTCGAGACTTTCACAGTTAATCTCACCACATCTGAAGGGAAGTCTGAGTTGAAGCGTGTGGAGAATGTAATGTTTGGTTGTGGACATTGGAATAGAGGTCTGTTCCAAGGAGCTGCTGGGTTGCTGGGACTAGGAAGAGGGCCATTGTCATTTGCTTCTCAGCTTCAATCTCTTTATGGTCATTCATTTTCCTATTGCCTTGTGGATAGAAACAGCAACAGTAGCAGCAAACTGATATTTGGGGAAGACAAGAAACTTCTCAGCAACCCAAACTTGAATTTCACCTCATTTGTGGGTGGGAAAGAAAACCCAGTTGATACATTTTACTATGTGCAGATAAAAGCTGTCATGGTTGGTGGTGAAGTACTGAAGATACCAAAGGAAACTTGGCTTGTATCTGCAGAAGAAGGTGGTGGTAGTGGTGGAGGAACCATCATTGATTCTGGCACTACTCTAACTTATTTTGCAGAGCCTGCTTATCAGATTATCAAGGAGGCTTTCATGAAGAAGATCAGGGGCTACAAGATGATTGAAGAAGGCCGTTTTCCTTTAAAGCCTTGCTATAATGTTTCTGGGTTTGAAGCTGTTGAGCTGCCTGATTTTGGGATCATGTTTGCAGATGGAGCTGTTTGGGATTTCCCTGTGGAAAATTACTTCTTTGAGATTGAACCAAGTGCTGTTGTTTGTTTGGCAATTCTGGGCACTCCTCATTCAGCTCTTTCCATAATTGGGAACTATCAGCAGCAGAACTTTCACATCCTCTATGATCTCAAGAATTCCAGACTCGGATTTGCACCAGTGAATTGTGCTGATTGCAATGCGATTGTGCTTCTTCCCCTTGCGTCCAGCCATCCATCGTCCCAAATGGTTTCGTTCAGGTTTCACCAGTACCAGGTGGTGGGAAGGGCCCTTCCTACAGAGACAGATGAGCACCCCAAGATCTATCGGATGAAGCTTTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTCCTGAGAAAGCTGAAGAAGGTGAAGAAAAGCAATGGGCAAGTGCTAGCCATTAATGAGATTTATGAGAAAAATCCTACCAAGATTGATAACTATGGAATCTGGCTGCGATATCAAAGTAGAACTGGTTATCATAACATGTACAAGGAATACCGAGACACCACCCTCAATGGTGCGGTTGAACAAATGTACACTGAAATGGCATCACGTCACAGGGTGAGGTTTCCATGCATCCAGATCATCAAGACAGCCACCATTCCTGCAAAGATGTGCAAACGAGAGAGCACCAAGCAATTTCACAATTCTAAAATCAAGTTCCCATTGGTGTTCAAGAAGGTCAGGCCGCCAAGTAGGAAGCTGAAGACAACTTACAAGGCATCAAGGCCCAACTTGTTCATGTGA 2262 0.4483 MALKFSLVLVLLVIYSSAVEAVSSNDNQNCLKKNGSSLAAIKMPDHPGLNTASSSAYTDCSFSKSEKFGHSGITTSDEDTGDDYVATPQKQLLKLDLKRRPVTVSEDAEPKKPVIDFTIRDLTRIQTLHRRVKEKKNQNTVSRLQETQLKSKQAVTPAPAQAAVPEYFINAYPGRLVATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCYVCFEQSGPYYDPKDSSSFKNISCHDKRCQLVSSPDPPQACKAEKQSCPYFYWYGDSSNTTGDFALETFTVNLTTSEGKSELKRVENVMFGCGHWNRGLFQGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSNSSSKLIFGEDKKLLSNPNLNFTSFVGGKENPVDTFYYVQIKAVMVGGEVLKIPKETWLVSAEEGGGSGGGTIIDSGTTLTYFAEPAYQIIKEAFMKKIRGYKMIEEGRFPLKPCYNVSGFEAVELPDFGIMFADGAVWDFPVENYFFEIEPSAVVCLAILGTPHSALSIIGNYQQQNFHILYDLKNSRLGFAPVNCADCNAIVLLPLASSHPSSQMVSFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIYEKNPTKIDNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATIPAKMCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2422g00005 753 PRINTS Pepsin (A1) aspartic protease family signature 528 543 IPR001461 GO:0004190|GO:0006508
Pral2422g00005 753 PRINTS Pepsin (A1) aspartic protease family signature 431 442 IPR001461 GO:0004190|GO:0006508
Pral2422g00005 753 PRINTS Pepsin (A1) aspartic protease family signature 197 217 IPR001461 GO:0004190|GO:0006508
Pral2422g00005 753 FunFam 60S ribosomal protein L18a 576 646 - -
Pral2422g00005 753 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 582 703 IPR023573 GO:0003735|GO:0005840|GO:0006412
Pral2422g00005 753 FunFam Eukaryotic aspartyl protease family protein 168 369 - -
Pral2422g00005 753 SUPERFAMILY Acid proteases 183 557 IPR021109 -
Pral2422g00005 753 CDD pepsin_A_like_plant 190 556 IPR034161 -
Pral2422g00005 753 Gene3D - 570 646 - -
Pral2422g00005 753 SUPERFAMILY RplX-like 646 721 - -
Pral2422g00005 753 Hamap 50S ribosomal protein L18Ae [rpl18a]. 581 644 IPR028877 -
Pral2422g00005 753 PANTHER OS07G0603500 PROTEIN-RELATED 140 556 - -
Pral2422g00005 753 Gene3D Acid Proteases 373 563 IPR021109 -
Pral2422g00005 753 Pfam Xylanase inhibitor N-terminal 191 368 IPR032861 -
Pral2422g00005 753 ProSiteProfiles Peptidase family A1 domain profile. 191 552 IPR033121 -
Pral2422g00005 753 FunFam Aspartyl protease family protein 370 559 - -
Pral2422g00005 753 Pfam Xylanase inhibitor C-terminal 396 552 IPR032799 -
Pral2422g00005 753 Gene3D Acid Proteases 171 369 IPR021109 -
Pral2422g00005 753 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 206 217 IPR001969 GO:0004190|GO:0006508
Pral2422g00005 753 Gene3D - 647 722 - -
Pral2422g00005 753 FunFam 60S ribosomal protein L18a 647 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2422g00005 Pral-Chr2422 53790 60387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2422g00005 562 753 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 86.979 9.03e-119 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2422g00005 K22683 - zju:107416111 1063.14