Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2420g00006 ATGATGATGAACAAGAAAGAGAGAGGTTCAATACTTGAAATATTCAGATATGCTGAGTGGACTGATGTAATGCTTATGTTGTTGGGTGCTTTGGGAGCAATAGGAGACGGCATGTCCACAAACGTTTTGCTTGTGTTTGCTAGCCGCATCATGAACAGCTTAGGTTATGGGAATACTCAAAAACAAACTAATGGTGGGAATTTTTCCATGGCCGAGGTTGAGAAGTGCAGCTTATATTTTGTGTACTTGGGATTAGCAGTCATGGCGTTAGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGCGAGAGGCAGGTGTTGAGAATTCGGTACAAGTATTTGGAAGCCGTGCTGAGACAAGAAGTGGGATTCTTCAATTCACAAGAAGCAACTACTTCAGACATCATAAACAGCATATCAAAGGATACTTCTCACTTCCAAGAACTTCTCAGTGAAAAGGTGCCTCTATTTTTGATGCATTCATCATCATTCATCTCAGGGATCGCCTTCTCAACGTACTTCTCATGGAGACTGGCCATAGTATCCTATCCAACACTGCTTCTTCTGATAATACCGGGAATGCTTTATGGGAAATACCTAATCTACTTGTCAAACAAGTCCCACAAAGAGTATGGCAAGGCAAACGCCATTGTAGAGCAGGCTTTAAGCTCTATAAAGACTGTTTATTCGTTCACAGCAGAGACAAGAATCATGGAGAGATATTCTGCAATACTTGACAGAATCTCAAGGCTTGGAATCAAACAAGGCATAGCCAAAGGTTTGGCTGTGGGAAGCACTGGCTTGTCCTTTGCTATATGGGCGTTTCTGGCTTGGTATGGAAGTCGTTTGGTTATGTACAAGGGTGAAAGTGGAGGAAGGATTTATGCAGCGGGAATTTCCTTCATCATGAGTGGGCTATCACTTGGAGTTGCACTTCCTGACCTTAAGCACTTCACAGAAGCATCTGTTGCAGCATCAAGATTATTTGATATGATTGACAGAATACCAACAATTGATAGTGAAGACACAAGAGGACTTGTGTTAGATTGCATAACTGGCAAGTTAGAGTTTGAGCATGTGAAATTCACCTACCCCTCACGTCCAGATACAATTGTTCTTAAGGATTTCAATCTCACAGTTGAAGCTGGCACAACTGTGGCTCTTGTTGGTGCAAGTGGGAGTGGTAAATCCACAGCAATAGGATTAGTACAGAGATTTTATGATGCAGATGAAGGTTTTGTGAAGGTTGATGGTGTAGACATAAGAAGCCTACAATTGAAATGGATAAGAGGAAAAATGGGACTTGTGAGTCAAGAGCCAGCACTATTTGGGACTTCAATAAAGGAGAATATTATGTTTGGTAAGCCAGATGCTACAATGGAGGAAGTAATTGCTGCAGCCATGGCTGCCAATGCTCATAACTTCATCAGGCAGCTTCCTGAAGGTTATGAAACTAAAATTGGAGAAAGAGGGGCTCTTCTATCAGGTGGACAAAAGCAGAGAATAGCTATTGCAAGAGCCATCATTAAGAATCCTGTGATTCTCCTTCTTGATGAAGCAACTAGTGCTCTTGATTCTGAATCAGAACTACTAGTTCAGAATGCACTTGATCAGGCCTCCATGGGAAGGACCACTTTGGTTGTTTCTCACAAGCTATCAACAGTTAGAAATGCAGACCTCATAGCAGTTGTCAATTGTGGCTGCATCATCGAAATAGGAACTCACAATGAACTCCTCAACAGCGAAGATGGGCACTATGCTAAACTAGCAAAGTTGCAATTCAGTTGTGATGAACATTTGCAGAACCCGGACCAGATTATTTCTTCTGTAGCAAGAAGCAGTGCTGGTAGACCAAGTACTGCAAGGTCAAGCCCTTCAATTTTCCCAAAATCACCATTGCCTGATGCTACCCCACCACTTGAGTCTCACCCTCCACCTTCTTTACCACGTCTTCTTTCTCTGAATGCTCCTGAATGGAAACAAGGTCTGGTTGGAAGCCTCTCAGCTGTAGCCTTTGGCTCAATTCAACCCATATATGCCTTAACCATTGGGGGTATGATTTCTGCATTTTTTGTTGAAAGCCATGAGGAAATGCGTCATAGGATTAGAACTTATTCCTTTATTTTCTCTTCATTATCCCTTGCTTCTATAATTCTCAATCTCTTCCAACACTATAATTTTGCCCATATGGGAGAGAAATTAACAAAGAGGGTCAGATTACAAATGCTAGAAAAGATCTTAACCTTTGAAACTGCCTGGTTTGATGAGGAACGAAACTCTAGTGGGGCCTTATGTTCAAGGTTGAGCAATGAGGCTTCCATGGTGAAGTCACTCGTTGCGGATCGCGTCTCTTTAATGGTTCAAACCACTTCTGCTGTAACAATTGCAATGATCATAGGGCTTATTGTGGCTTGGAAGCTTGCACTTGTTATGATAGCTGTACAACCACTGACAATACTTTGTTTCTATACAAGAAAAGTGTTGCTCTCCACACTTTCAACTAATTTTGCCAAGGCTCAGAATCATAGCACACAAATTGCAGTAGAAGCTGTTTATAATCATAAAATTGTAATTTCCTTTGGAAGCAACAAGAAAGTTGTACAACTATTTGATGAAGCTCAAGAGGCACCAAGGAAGGAAGCCAGAAAGAAGTCTTGGCTAGCCGGGATTGGAATGGGTTCGGCTCAGTGCCTAACTTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGGACATTAGTTAAGAAAGGAGAAATATCAGCGGGGGATGTGTTCAAGACATTTTTTGTATTGGTGAGCACAGGCAAAGTCATAGCTGAAGCTGGAAGCATGACTTCTGATCTTGCCAAGGGTTCAGCAGCAGTGGCATCTGTTTTTGCGATTCTCGATAGACAATCATTAATCCCAAAGGGTGGGAATGTCATTAATGGGTGCAAATTGATCAAAATAAGAGGAAAGATAGAGATGAAAGATGTTGATTTTGCTTACCCAAGCAGGCCAGGGACTCCAATACTGAGAAAATTTTGCTTGGAGGTGAAGTCAGGAACAAGCATAGGAGTAGTAGGGAAAAGTGGGAGTGGAAAATCAACAGTGATAGCTTTAATTCAGAGATTCTATGATGTTCAGAGAGGGTCTATCAAAGTGGACGGTATAGACATAAGAGAACTAGACATTCAGTGGTACAGGAAACACACAGCACTGGTTAGCCAAGAACCTGTAATCTACTCAGGAAGCATACGAGACAACATCTTATTTGGAAAGCAAGAAGCAACAGAAGGTGAAGTTGTGGAAGCTGCAAGAGCTGCTAATGCTCATGACTTCATTTCGTCACTGAAAGATGGGTATGAAACAGAATGTGGAGAAAGAGGAGTACAACTATCAGGAGCAAAGCAGAGAATAGCAATTGCAAGAGCCATAATTAGAAACCCAACAATACTTCTGCTAGATGAAGCAACCAGTGCCTTAGACGTTGAATCAGAACAAGTGGTACAAGAAGCACTTGATAGAATAATGGTGGGTAGAACTACCATCGTGGTGGCACACAGACTTAACACCATTAAGGAGCTTCAATCCATTGCCTATGTTTCAGACGGCAAGGTTCTTGAACAAGGAACCTATTCACAGCTTTGGCACAAGAAAGGCGCTTTCTTCAACCTTGCTAGCCATCAATCTTAA 3675 0.4199 MMMNKKERGSILEIFRYAEWTDVMLMLLGALGAIGDGMSTNVLLVFASRIMNSLGYGNTQKQTNGGNFSMAEVEKCSLYFVYLGLAVMALAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFNSQEATTSDIINSISKDTSHFQELLSEKVPLFLMHSSSFISGIAFSTYFSWRLAIVSYPTLLLLIIPGMLYGKYLIYLSNKSHKEYGKANAIVEQALSSIKTVYSFTAETRIMERYSAILDRISRLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSRLVMYKGESGGRIYAAGISFIMSGLSLGVALPDLKHFTEASVAASRLFDMIDRIPTIDSEDTRGLVLDCITGKLEFEHVKFTYPSRPDTIVLKDFNLTVEAGTTVALVGASGSGKSTAIGLVQRFYDADEGFVKVDGVDIRSLQLKWIRGKMGLVSQEPALFGTSIKENIMFGKPDATMEEVIAAAMAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVSHKLSTVRNADLIAVVNCGCIIEIGTHNELLNSEDGHYAKLAKLQFSCDEHLQNPDQIISSVARSSAGRPSTARSSPSIFPKSPLPDATPPLESHPPPSLPRLLSLNAPEWKQGLVGSLSAVAFGSIQPIYALTIGGMISAFFVESHEEMRHRIRTYSFIFSSLSLASIILNLFQHYNFAHMGEKLTKRVRLQMLEKILTFETAWFDEERNSSGALCSRLSNEASMVKSLVADRVSLMVQTTSAVTIAMIIGLIVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTNFAKAQNHSTQIAVEAVYNHKIVISFGSNKKVVQLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVKKGEISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKGSAAVASVFAILDRQSLIPKGGNVINGCKLIKIRGKIEMKDVDFAYPSRPGTPILRKFCLEVKSGTSIGVVGKSGSGKSTVIALIQRFYDVQRGSIKVDGIDIRELDIQWYRKHTALVSQEPVIYSGSIRDNILFGKQEATEGEVVEAARAANAHDFISSLKDGYETECGERGVQLSGGXKQRIAIARAIIRNPTILLLDEATSALDVESEQVVQEALDRIMVGRTTIVVAHRLNTIKELQSIAYVSDGKVLEQGTYSQLWHKKGAFFNLASHQS 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2420g00006 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 979 1224 IPR027417 -
Pral2420g00006 1225 CDD ABC_MTABC3_MDL1_MDL2 356 593 - -
Pral2420g00006 1225 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 27 320 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2420g00006 1225 Pfam ABC transporter 1008 1154 IPR003439 GO:0005524
Pral2420g00006 1225 Pfam ABC transporter 373 522 IPR003439 GO:0005524
Pral2420g00006 1225 SUPERFAMILY ABC transporter transmembrane region 645 963 IPR036640 GO:0005524|GO:0016020
Pral2420g00006 1225 ProSitePatterns ABC transporters family signature. 494 508 IPR017871 GO:0005524|GO:0016887
Pral2420g00006 1225 Gene3D ABC transporter type 1, transmembrane domain 13 897 IPR036640 GO:0005524|GO:0016020
Pral2420g00006 1225 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 355 591 IPR003439 GO:0005524
Pral2420g00006 1225 MobiDBLite consensus disorder prediction 607 649 - -
Pral2420g00006 1225 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 663 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2420g00006 1225 SMART AAA_5 1014 1206 IPR003593 GO:0016887
Pral2420g00006 1225 SMART AAA_5 382 574 IPR003593 GO:0016887
Pral2420g00006 1225 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 987 1223 IPR003439 GO:0005524
Pral2420g00006 1225 CDD ABC_6TM_Pgp_ABCB1_D2_like 652 968 - -
Pral2420g00006 1225 Gene3D - 978 1225 IPR027417 -
Pral2420g00006 1225 FunFam ABC transporter B family member 1 13 348 - -
Pral2420g00006 1225 PANTHER ABC TRANSPORTER B FAMILY 4 709 IPR039421 -
Pral2420g00006 1225 Pfam ABC transporter transmembrane region 30 293 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2420g00006 1225 Pfam ABC transporter transmembrane region 667 933 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2420g00006 1225 FunFam ABC multidrug transporter SitT 977 1225 - -
Pral2420g00006 1225 Gene3D - 345 605 IPR027417 -
Pral2420g00006 1225 FunFam ABC transporter B family member 4 345 599 - -
Pral2420g00006 1225 CDD ABC_6TM_Pgp_ABCB1_D1_like 26 328 - -
Pral2420g00006 1225 MobiDBLite consensus disorder prediction 631 646 - -
Pral2420g00006 1225 SUPERFAMILY ABC transporter transmembrane region 13 339 IPR036640 GO:0005524|GO:0016020
Pral2420g00006 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 594 IPR027417 -
Pral2420g00006 1225 MobiDBLite consensus disorder prediction 607 627 - -
Pral2420g00006 1225 FunFam Putative ABC transporter B family member 8 628 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2420g00006 Pral-Chr2420 27853 35818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2420g00006 80 593 Calmodulin-binding Proteins AT2G36910 37.572 3.37e-100 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2420g00006 K05658 - gmx:100801088 1936.38