Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2419g00003 ATGAAGATGATCAGAATCCAGAGGTGGAGCAGCTGCACATCATTCTCAACGATGGGAAAGAAAGGCTTGAAGTGTTGGTATTTGGCCTCGTTCAGTCTGCTTCTAACGCTCGGTGTTACGAGTTCTCAAGAGCAGAACAAACCCTGTCCTCCGTCTCGGTGCGGCATTATCACAAACATCTCATATCCATTTCGCCTGCGAGATGACCCAGCCAACTGCGGCGACCCCAAATTCGAGCTAGCCTGCGAAAACAACGTCACTCTTGTTCATTTGTATAACGGAACATACAGAGTACTGGCAATAAACTACAACAACTATACAATCCGACTCGTAGATCCTGGCATTCAGGCGGGCAATTGTTCCTCCCTCCCTCGCTATTCCTTATCCCAATCCAATTTCACCGAAACTTACCTCTTAAACATGGAATACGATAGCACTAATCCCTACGGCGCAAATCTGAAGCGAATAGGATTAGAAGTTTCATTCAAACACATTGTGTACCTGAACTGCAGCGATCCAGTGAGGGATGACACATCATACCTCGATACATCTCCATGCGTGAATTGGGAATCCAAAGGAGGAGGTCATGTGTATGCATTAGCGGGAGATTTACTGGTTAAGGAGTTAAAACCTCAATGTCGAGTGAAATCGGTGGCCACCATTTCATTAGATTGGGATTCACAGGTAGGCGGTGGAATCAAGTCATACGCCGAAATTCACAGAGTGCTTTCCAATGGATTCGAGGTTTTGTGGTGGAAACGAGCTTGTGTTGATCATAGTTGTCCCATTTCCAGTTTCTGCTCTTTGAACCGCGAAACTCTCAGGCTCCAATGCGCACGGGATTTCTCGTCCTGTTACAGTCCCATGGGAATAACTGTGCATAGCGGAATTTTATGCAATCAGTTAACAAAGCTGCGCATATTGGCAGAAGATTACCTCTATGGAATTCAAAAAGGACTAAGCCAAGTGGTGGGGAAAGATATAGACCCTCACCATGAAGACTATGATTTTAGTCTAACAAATGTTGCAATCATATTAGGAATAATCACTGGAAGAGGTTTTGTGCCATACATCACTGTCAGATTTTTCTTGGGCACCATATTCCTATCAACACTGTTGATTTATATATTTCGCAGAAGACACTTATCAATGTATGAAAACATCGAAGATTTCATAAGACTTCAAAATCTTATCCCAATAAGGTATTCCTACAAGGATTTGAAGAAAATGAGCGAAGGTTTTAAGAATAAGTTGGGTCAAGGAGGCTTTGGCACTGTATATAAAGGGAAGCTAAGGAGTGGACCTATGGTTGCTATCAAAATGTTGGGTGACTCCAAAACTAATGATCAAGAATTTATCAGTGAAGTTGCAACTATTGGTAGGATACATCATTTCAATGTGGTACATCTTGTTGGGTTTTGTATAGAAGGAACGAAGCGTGCTCTTCTCTATGAGTTTATGTCGAATGGTTCTTTGGATAAAGTTATTTTTTCCAAAGGGAATATCTCCTTGAGTTATCATAAAGTATATGAGATATCTTTGGAGATAGCTCGTGGGATTGCCTACCTTCATCATGGTTGTGACATGCAGATATTACATTTTGATATCAAGCCTCATAACATTCTTCTTGATGATGACTTCACTCCAAAGATTTCAGATTTTGGACTAGCGAGATTGTATGCAATTGATGATAGTATTGTCACCTTGACTGCAGCAAGAGGAACAATAGGATATATGGCTCCTGAGTTATTCTACAAGAATATTGGAGGAGTGTCTTATAAGGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTCGAAGAAGAAATATGAATCAAGATGCAGAAGATTCAAGTGAAGCTTACTTTCCTTTATGGATATATGACCAATTCAATGAAGAGAAAGACATAGAAATGGAAGATTTAACAGAGGTGGATAAGAATTTGGCAAGGAAAATGATTATAGTAGCACTTTGGTGCATACAACTAAAACCTATTGATCGCCCTTCAATGAATAAGGTAATAGAAATGTTAGAAACCGAGGATGTTGAAAGTCTTGAAATGCCTCCAAAACCTTCTCTATATCCTAATGAGAGGGTTTTAATGGATGATAGTTTCAGTTCTAGCCAAACATCATCCGCTATCTCTGCAGATTCTCCTAGCAGCCTAGGTGAGGTTTGA 2190 0.4059 MKMIRIQRWSSCTSFSTMGKKGLKCWYLASFSLLLTLGVTSSQEQNKPCPPSRCGIITNISYPFRLRDDPANCGDPKFELACENNVTLVHLYNGTYRVLAINYNNYTIRLVDPGIQAGNCSSLPRYSLSQSNFTETYLLNMEYDSTNPYGANLKRIGLEVSFKHIVYLNCSDPVRDDTSYLDTSPCVNWESKGGGHVYALAGDLLVKELKPQCRVKSVATISLDWDSQVGGGIKSYAEIHRVLSNGFEVLWWKRACVDHSCPISSFCSLNRETLRLQCARDFSSCYSPMGITVHSGILCNQLTKLRILAEDYLYGIQKGLSQVVGKDIDPHHEDYDFSLTNVAIILGIITGRGFVPYITVRFFLGTIFLSTLLIYIFRRRHLSMYENIEDFIRLQNLIPIRYSYKDLKKMSEGFKNKLGQGGFGTVYKGKLRSGPMVAIKMLGDSKTNDQEFISEVATIGRIHHFNVVHLVGFCIEGTKRALLYEFMSNGSLDKVIFSKGNISLSYHKVYEISLEIARGIAYLHHGCDMQILHFDIKPHNILLDDDFTPKISDFGLARLYAIDDSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNMNQDAEDSSEAYFPLWIYDQFNEEKDIEMEDLTEVDKNLARKMIIVALWCIQLKPIDRPSMNKVIEMLETEDVESLEMPPKPSLYPNERVLMDDSFSSSQTSSAISADSPSSLGEV 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2419g00003 729 Pfam Wall-associated receptor kinase galacturonan-binding 49 112 IPR025287 GO:0030247
Pral2419g00003 729 MobiDBLite consensus disorder prediction 689 729 - -
Pral2419g00003 729 Pfam Protein kinase domain 415 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2419g00003 729 Gene3D Transferase(Phosphotransferase) domain 1 487 691 - -
Pral2419g00003 729 SMART serkin_6 412 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2419g00003 729 Gene3D Phosphorylase Kinase; domain 1 379 486 - -
Pral2419g00003 729 SUPERFAMILY Protein kinase-like (PK-like) 397 682 IPR011009 -
Pral2419g00003 729 ProSitePatterns Protein kinases ATP-binding region signature. 418 440 IPR017441 GO:0005524
Pral2419g00003 729 MobiDBLite consensus disorder prediction 705 729 - -
Pral2419g00003 729 FunFam serine/threonine-protein kinase PBS1-like 382 486 - -
Pral2419g00003 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Pral2419g00003 729 ProSiteProfiles Protein kinase domain profile. 412 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2419g00003 729 PANTHER RUST RESISTANCE KINASE LR10-RELATED 385 708 IPR045874 GO:0004672
Pral2419g00003 729 FunFam PR5-like receptor kinase 487 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2419g00003 Pral-Chr2419 21639 26653 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2419g00003 363 714 Receptor kinase-like Gene Family AT5G38260 46.518 5.28e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral2419g00003 Pkinase 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2419g00003 - - pcin:129321062 873.618