Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral2417g00004 | ATGGGCAACTGTTGCTCTCAGAGCAACGACACCGATGCCCCGGCCGAATCGGCCGAGGTTGCCAAGGGAGGATCAACAAACAACAACTCCCAAGGCAGCAATAATAACACCGGAGGAGGGGGAGGAGAAGGCGGTGGCGGTGCCAGCAACCACCAGAGTTCGGGGAAATCATCCCCGGCCCCTAATCCTCCTCCGTCCAAAGCCGCGAAACCCGGCCCAATGGGTCCCGTGCTCCAGCGTCCCATGGAAGACGTGAAAGCCACGTACACCATAGGAAAGGAGCTAGGAAGAGGACAATTCGGAGTCACGCATTTGTGTACGCATAAGGCCACCGGACAACAATACGCGTGCAAGACGATCGGGAAGAGGAAGCTCGCGAACAAAGAAGATATCGAGGACGTGAGGAGGGAGGTTCAGATAATGCATCATTTGGCGGGACAACCGAACGTGGTGGAGCTGAAAGGAGCGTATGAGGATAAACATTCGGTGCATCTGGTGATGGAGCTGTGCGCCGGCGGCGAACTGTTCGATCGGATCATCGAGAAGGGTCATTACACGGAGCGAGCGGCGGCGTCGTTGATGAGGACGATAGTGCAGATCGTTCATACTTGTCACTCCATGGGCGTGATTCATAGAGATCTCAAACCTGAGAACTTCTTGCTCTTGAATAAGAAGGAGGATTCGCCTCTCAAGGCCACCGATTTCGGTTTATCCGTTTTCTACAAAGAAGGGGAGACATTTAAAGATATTGTTGGGAGTGCATATTATATAGCTCCAGAGGTATTGAAGAGGAGATATGGGCCTGAAGTTGATATTTGGAGTATTGGTGTCATGCTCTACATTCTTCTTTGTGGTGTTCCTCCATTTTGGGCTGAATCGGAGCATGGCATCTTCAATGCCATATTAAGAGGCCACGTAGATTTTTCAGCCGATCCATGGCCATCCATATCACCATCAGCTAAAGATCTTGTGAAGAAAATGTTGAATTCTGATCCCAAGGCCAGGCTCACAGCCCACCAAGTTCTAAATCATCCATGGATTAAGGAGGATGGAGAAGCACCTGATACTCCTCTTGACAATGCTGTGCTCAACAGGCTCAAACAGTTTAGAGCAATGAACCAATTCAAGAAAGCTGCTTTAAGGGTGATTGCTGGGTGCCTATCAGAGGAAGAAATAATGGGATTGAAGGAAATGTTCAAGAACATGGACACTGATGGCAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGCCTTGCTAAACAAGGAACCAAGCTTTCTGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCAGATGGCAATGGAACCATAGATTATGACGAGTTCATCACAGCAACGATGCAGATGAACCGAATGAACAAAGAAGAACATCTCTACACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTACATTACCATTGAAGAAATGGAGCAAGCTCTCAAGGACTTCAACATGCATGACGGCAGGGACATCAAAGAAATCATCTCAGAAATTGACTCAGATCACGATGGAAGGATAAACTATGAAGAGTTTGTAGCAATGATGAGAAAAGGGAACCCAGAAGCTATGACCAAGAAGAGGCGTGATTCTTCATATGTCTGA | 1635 | 0.4777 | MGNCCSQSNDTDAPAESAEVAKGGSTNNNSQGSNNNTGGGGGEGGGGASNHQSSGKSSPAPNPPPSKAAKPGPMGPVLQRPMEDVKATYTIGKELGRGQFGVTHLCTHKATGQQYACKTIGKRKLANKEDIEDVRREVQIMHHLAGQPNVVELKGAYEDKHSVHLVMELCAGGELFDRIIEKGHYTERAAASLMRTIVQIVHTCHSMGVIHRDLKPENFLLLNKKEDSPLKATDFGLSVFYKEGETFKDIVGSAYYIAPEVLKRRYGPEVDIWSIGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFSADPWPSISPSAKDLVKKMLNSDPKARLTAHQVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKAALRVIAGCLSEEEIMGLKEMFKNMDTDGSGTITIEELKQGLAKQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNKEEHLYTAFQYFDKDNSGYITIEEMEQALKDFNMHDGRDIKEIISEIDSDHDGRINYEEFVAMMRKGNPEAMTKKRRDSSYV | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral2417g00004 | 544 | Pfam | Protein kinase domain | 89 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pral2417g00004 | 544 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 83 | 522 | - | - | |
| Pral2417g00004 | 544 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 354 | - | - | |
| Pral2417g00004 | 544 | FunFam | calcium-dependent protein kinase 1 | 175 | 354 | - | - | |
| Pral2417g00004 | 544 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 501 | 532 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | ProSiteProfiles | Protein kinase domain profile. | 89 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pral2417g00004 | 544 | ProSitePatterns | EF-hand calcium-binding domain. | 403 | 415 | IPR018247 | - | |
| Pral2417g00004 | 544 | Gene3D | - | 355 | 530 | - | - | |
| Pral2417g00004 | 544 | Gene3D | Phosphorylase Kinase; domain 1 | 90 | 174 | - | - | |
| Pral2417g00004 | 544 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 390 | 425 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | MobiDBLite | consensus disorder prediction | 21 | 40 | - | - | |
| Pral2417g00004 | 544 | FunFam | Calcium-dependent protein kinase 1 | 355 | 530 | - | - | |
| Pral2417g00004 | 544 | ProSitePatterns | EF-hand calcium-binding domain. | 510 | 522 | IPR018247 | - | |
| Pral2417g00004 | 544 | SMART | efh_1 | 466 | 494 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | SMART | efh_1 | 501 | 529 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | SMART | efh_1 | 394 | 422 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | SMART | efh_1 | 430 | 458 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | CDD | STKc_CAMK | 89 | 346 | - | - | |
| Pral2417g00004 | 544 | ProSitePatterns | Protein kinases ATP-binding region signature. | 95 | 122 | IPR017441 | GO:0005524 | |
| Pral2417g00004 | 544 | ProSitePatterns | EF-hand calcium-binding domain. | 475 | 487 | IPR018247 | - | |
| Pral2417g00004 | 544 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
| Pral2417g00004 | 544 | SUPERFAMILY | EF-hand | 387 | 527 | IPR011992 | - | |
| Pral2417g00004 | 544 | FunFam | Calcium-dependent protein kinase 1 | 91 | 174 | - | - | |
| Pral2417g00004 | 544 | SUPERFAMILY | Protein kinase-like (PK-like) | 74 | 374 | IPR011009 | - | |
| Pral2417g00004 | 544 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 209 | 221 | IPR008271 | GO:0004672|GO:0006468 | |
| Pral2417g00004 | 544 | ProSitePatterns | EF-hand calcium-binding domain. | 439 | 451 | IPR018247 | - | |
| Pral2417g00004 | 544 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 462 | 497 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | CDD | EFh | 395 | 454 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | Pfam | EF-hand domain pair | 464 | 527 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | Pfam | EF-hand domain pair | 395 | 455 | IPR002048 | GO:0005509 | |
| Pral2417g00004 | 544 | SMART | serkin_6 | 89 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pral2417g00004 | 544 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 426 | 461 | IPR002048 | GO:0005509 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral2417g00004 | Pral-Chr2417 | 39491 | 43850 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral2417g00004 | 1 | 543 | EF-hand Containing Proteins | AT5G12180 | 79.374 | 0.0 | 897 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_CDPK | Pral2417g00004 | Pkinase | 6.2e-77 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral2417g00004 | K13412 | - | qsa:O6P43_020973 | 875.544 |