Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2404g00013 ATGGAGCACAAGCCCATGTTGCTGACAGCATTCGGTGTTGGGGTTGGTCTCGGAGCAAGCCTTGGGTTGAGCTCAGGGCTTGTTGGAGGAGGGAATGGCGAGGCGGGTGATGAGCTTTATGGTGAACAGATTGAGCAGGAGCTTTTGAGGCAGGTGATCGATGGAAAGGAATGCAAAGAAACTTTTCAAGAGTTTCCGTATTACTTAAGTGAAAGAACTCGAGAGTTATTGAAAAGTGCTGCATCTGTTCATTTAAGGCAACTTTTCTTTTCCAAACACACTCGGAACCTTTCACCAGCAAGCAGGGCAATTCTGCTTTCTGGACCCGCGGAATTTTACATACAAACGCTTGCCAAGGCTTTAGCACATCATTTTGACTCAAAGTTGCTGCTGCTAGATGTAGCTGACTTCTCTTCCAAGATACAGAGCAAATATGGATGTGCAAGTAAAGAATCATCTTCTAAAATTTCGTTATCTGAGGTGGCTTCCCAGGGAGTGTCGGATTTGATTGGTTCTGTCCTCTCGTCAAACGGCAAAACTAAAGGCACTTTTCAGAAACACAGTAATGCTACTGGAAGTCCCAATATTACTTCAAATCTTCGTGGGGCTACTGCTTGCCAATCTGCTCCAGCAGATTCTGCTAAGCAGAAAAGTAGCTTGTGTATCAATGAAAAACTCTTTATGCAGTTGCTTTATAAGGTATTGGTTTCTGTGTCAGAAAAGAGTTCCATCATCTTGTACATCAGGGATGCTGACAAGATTTTCCTCCAATCAGAGCAACTGTATAATTTGTTTAACAATATGCTGGGGGAACTTCGAGGGCCAGTGCTGATACTTGCTTCCAAGATCGCAGTCCAAACCGAAAAACTTGGAAATCTCCCACCATGGGTAGTGCTGTCTTGCAAAGAGAATAAATGTTCAAAAGTTGATGAAAGGCTCGCAGGATTGTTCCCTTACATCATTAAGATCAAGCCACCAGAAGATGAAAATGATCTTGAGGAATGGAAAGCCCAGCTGGAAGAGAACAAGAAAACAATTAAGTCTCAAGATAACAGAAACCACATTGCTGCTGTACTGGTAGAAAATGATGTTGAATGTAGAGACTTGAATTCAATCAGCCATGAGGACACAAAGATACTAGGTAAACATGTCGAAGAAATTGTGTTATCTGCAATATCTTACTACTTGATGAATACCAAGGATCCAGAATATCGGAATCAAAAGCTTGTAATATCATCTGAGAGCTTGTCCCATGGTTTGGATCTATTTCGCAAAAAGGAAAGCAGTGACAAGGGAAAGAAGCAAGGGACTAGTGTAAAGAAGCAAGAAACTAGAGGAAAAAAGGAAGTTCGTCCAGACAATCAGCATGAGGGGCACATAAGAGAAGAACTTATCCCTGCGAATGAGATAGGAGTTACATTCTCAGATATTGGTGCTTTAGAGGAAATTAAGGAATCACTACAAGAGCTAGTCATGCTTCCAATTCGAAGACCAGAGCTCTTCAAAGGTGGGCTTCTTAAGCCTTGTCGAGGCATATTGCTCTTTGGACCTCCGGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCAGGAGCTAGTTTCATTAATGTCTCCATGTCTACCATCACATCAAAGTGCTTTGGAGAATCTGAGAAGCATGTCCGTGCTCTGTTCTCTCTAGCTGCAAAGGTTTCTCCGACTATCATTTTCATTGATGAGGTTGATAGCTTGCTCGGGAGTCGAGCAAGATGTGGAGAGCATGAGGTTACGAGGAGGATTAAGAATGAATTCATGACCCATTGGGATGGTCTATTGACAAAACAAGATGAGAGAATTCTGGTTCTTGCAGCAACCAATAGGCCATTCGACCTTGATGATGCAATCATAAGGCGATTTGAGCGAAGAATCATGGTTGGTCTTCCATCAGTTGAGAGTAGGGAGATTATCTTGAAAACTCTGCTAAGTAAGGAAGATACTGAAAATTTAGACTTGAAGGAGATTGCAGTCATGACAGAGGGATATACTGGAAGCGACCTCAAGAATTTGTGCACTGCTGCTGCTTATCGACCTGTTAGGGAGCTAATAAAACAGGGGAAGTTGGAGGCTTTGGAGAAGAATAAAGAAGAGGCCGAGGGCCAAAACTCAAAAGCTGCTTCAAGTGCCAAAGAGGATACAAAAGAGAAAAACAAAAGTGACATGTGCATGGATGAAGAATTCTTCATGCAGTTGCTTTATAAGGTCGTGGTTTCTGTCTCAGAAAAAAGTTCCATTATATTATACATCAGGGATGTTAATAGGATTTTCCTAGAATCAGAACAACTGTATAAGTTGTTTCAAGAAATTCTAGAGAAACTTTCAGGGCCAATTTTGATACTTGGTTCCCAAATAACTGATATTGAAGATGAATGGTCAGAAGATGAATTGCTGGGAAATGAGTGGTTACCATGTTTTGTTCCACCACCAGAAGCTGGTGCAGAAGTTGATGAAAGGATCGCTGCATTATTCCCTTACAATATTCAGATCAAACCTCCTAAAGATGAGCATAATCTTCAAAACTGGAAAACCCAACTAGAGGGGGACAAGAAAACAATTCAGTCTCAAGATAACCAAAACCACATTGCTCAAGTACTAGCAGAAATGGATGTTGAATGTAAAGACTTGAATTCAATCAACCACGAGGATACAGAAGTACTAAGCAAACATATTGAAGAAATTGCGGTATCTGCAGTATCTTACTACTTGATGAATACCAAGGATCCAGAATATCATAATGGAAAGCTTGTAATATCATCTGAAAGTTTGTGCCACAGTTTGGGTCTATTCCGCAAAACCAATACTGTCAATGATACTCAGAAGACAGAGACTGATGGAAAGAAAGAAGTTCCTCCGGACAATAATTATGAAGCGAACATGAGATCAGAGCTTATCCCTGCAAATCAGATAGGAGTTACATTCGCAGATATTGGTGCATTAGAGGAAGTTAAGGAATCACTCCAAGAGCTAATCATGCTTCCACTTCGAAGACCAGAGCTCTTCAAAGGTGGACTTCTTAAGCCTTGTCGAGGTATTCTACTTTTCGGACCACCAGGAACCGGCAAAACAATGCTTGCAAAGGCAATTGCACATGAGGCAGGAGCAAGTTTCATCAATGTCCCAATGTCTGCCATCACATCAATGTGGTATGGAGAAGCTGAGAAGAATGTCCGAGCTATCTTCACACTGGCTGCAAAGGTTTCTCCAACTATTATTTTTATTGATGAGGTTGATAGCTTGCTTGGGCAAAGAGCAAGATGCGGAGAGCATGAGGCTACGAGGAGGATTAAGAATGAATTCATGACCCATTGGGATGGCCTGTTGACAAAACAAGATGAGAGAATTCTGGTTCTTGCCGCAACCAACAGGCCATTTGACCTTGATGATGCAATCATAAGACGGTTTCAGCGAAGATTCATGGTTGGTCTTCCATCTGTTGAGACTAGGGAGATTATCTTGAAAACCATGCTAGCCAAGGAAAATACTGAAAAGTTAGACTTCAAAGAGCTTGCAATCATGACAGAGGGATATACTGGGAGCGACCTCAAGAATTTGTGCACTGCTGCTGCTTATCGACCAGTTAAGGAGCTAATAAAGCAGGAGAGATTGAAGGATATGGAAAAGAATAAAAATGAAGCTGAAGGCCAAAGCTCAGAAGCCGCTTCAAGTGCCAAAGAGGATACAAACGAGAAAGAAAAGAACAAGAAAGATGCTGAAGGCCAGGGCCAAAGCTCAAAAGCTGATTCAAGTGCTAAGGAGAACAAAGAAGATCCAGTAACTACCCTAAGGCCTATAAACATGGAAGACATGATTCAGGCTAAGAATCAGGTTCCCCCAAGTTTTGATGATAATGGATTAATAATGCGAGAACTGCAGCAGTGGAATAAGCTCTATGGAGAACGAGTTTTGCTGTAG 3957 0.4175 MEHKPMLLTAFGVGVGLGASLGLSSGLVGGGNGEAGDELYGEQIEQELLRQVIDGKECKETFQEFPYYLSERTRELLKSAASVHLRQLFFSKHTRNLSPASRAILLSGPAEFYIQTLAKALAHHFDSKLLLLDVADFSSKIQSKYGCASKESSSKISLSEVASQGVSDLIGSVLSSNGKTKGTFQKHSNATGSPNITSNLRGATACQSAPADSAKQKSSLCINEKLFMQLLYKVLVSVSEKSSIILYIRDADKIFLQSEQLYNLFNNMLGELRGPVLILASKIAVQTEKLGNLPPWVVLSCKENKCSKVDERLAGLFPYIIKIKPPEDENDLEEWKAQLEENKKTIKSQDNRNHIAAVLVENDVECRDLNSISHEDTKILGKHVEEIVLSAISYYLMNTKDPEYRNQKLVISSESLSHGLDLFRKKESSDKGKKQGTSVKKQETRGKKEVRPDNQHEGHIREELIPANEIGVTFSDIGALEEIKESLQELVMLPIRRPELFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKCFGESEKHVRALFSLAAKVSPTIIFIDEVDSLLGSRARCGEHEVTRRIKNEFMTHWDGLLTKQDERILVLAATNRPFDLDDAIIRRFERRIMVGLPSVESREIILKTLLSKEDTENLDLKEIAVMTEGYTGSDLKNLCTAAAYRPVRELIKQGKLEALEKNKEEAEGQNSKAASSAKEDTKEKNKSDMCMDEEFFMQLLYKVVVSVSEKSSIILYIRDVNRIFLESEQLYKLFQEILEKLSGPILILGSQITDIEDEWSEDELLGNEWLPCFVPPPEAGAEVDERIAALFPYNIQIKPPKDEHNLQNWKTQLEGDKKTIQSQDNQNHIAQVLAEMDVECKDLNSINHEDTEVLSKHIEEIAVSAVSYYLMNTKDPEYHNGKLVISSESLCHSLGLFRKTNTVNDTQKTETDGKKEVPPDNNYEANMRSELIPANQIGVTFADIGALEEVKESLQELIMLPLRRPELFKGGLLKPCRGILLFGPPGTGKTMLAKAIAHEAGASFINVPMSAITSMWYGEAEKNVRAIFTLAAKVSPTIIFIDEVDSLLGQRARCGEHEATRRIKNEFMTHWDGLLTKQDERILVLAATNRPFDLDDAIIRRFQRRFMVGLPSVETREIILKTMLAKENTEKLDFKELAIMTEGYTGSDLKNLCTAAAYRPVKELIKQERLKDMEKNKNEAEGQSSEAASSAKEDTNEKEKNKKDAEGQGQSSKADSSAKENKEDPVTTLRPINMEDMIQAKNQVPPSFDDNGLIMRELQQWNKLYGERVLL 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2404g00013 1318 Pfam ATPase family associated with various cellular activities (AAA) 1026 1156 IPR003959 GO:0005524|GO:0016887
Pral2404g00013 1318 Pfam ATPase family associated with various cellular activities (AAA) 512 642 IPR003959 GO:0005524|GO:0016887
Pral2404g00013 1318 Gene3D - 472 643 IPR027417 -
Pral2404g00013 1318 SMART AAA_5 1022 1159 IPR003593 GO:0016887
Pral2404g00013 1318 SMART AAA_5 508 645 IPR003593 GO:0016887
Pral2404g00013 1318 Gene3D - 644 723 - -
Pral2404g00013 1318 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 722 - -
Pral2404g00013 1318 Gene3D - 1159 1294 - -
Pral2404g00013 1318 MobiDBLite consensus disorder prediction 1238 1256 - -
Pral2404g00013 1318 MobiDBLite consensus disorder prediction 423 456 - -
Pral2404g00013 1318 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 985 1160 - -
Pral2404g00013 1318 Coils Coil 1210 1255 - -
Pral2404g00013 1318 Coils Coil 332 352 - -
Pral2404g00013 1318 ProSitePatterns AAA-protein family signature. 1129 1148 IPR003960 GO:0005524|GO:0016887
Pral2404g00013 1318 MobiDBLite consensus disorder prediction 708 732 - -
Pral2404g00013 1318 Pfam AAA+ lid domain 664 700 IPR041569 -
Pral2404g00013 1318 Pfam AAA+ lid domain 1179 1222 IPR041569 -
Pral2404g00013 1318 ProSitePatterns AAA-protein family signature. 615 634 IPR003960 GO:0005524|GO:0016887
Pral2404g00013 1318 Gene3D - 986 1297 IPR027417 -
Pral2404g00013 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 691 IPR027417 -
Pral2404g00013 1318 Coils Coil 703 723 - -
Pral2404g00013 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 980 1205 IPR027417 -
Pral2404g00013 1318 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 471 646 - -
Pral2404g00013 1318 MobiDBLite consensus disorder prediction 1222 1283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2404g00013 Pral-Chr2404 141236 155790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2404g00013 379 700 Calmodulin-binding Proteins AT3G56690 29.341 6.14e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2404g00013 - - pcin:129285842 1089.72