Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2404g00008 ATGACACCTCTGGAGTTCTCTCTATCAGCTCAAATGGAAATCTGGTTCTGCATGAGCTTTGATCATCCTACCGATACCTTGCTTCCGTATGCCAGAATTGGAGTCAACAAAAGAACTGGTCAGAGTGAGTTCTTGCAGTCATGGAAGACCGAGGATGATCCTGGAACAGGAAGCTTCTCTGTTGGGTTCAATACTAGTGGGAAATCCCAGTTGTTCTTGTACAATAATAATGCCCCATGGTGGCGTATTGGATCCTTCAACGGCGAAATGTATGTTGGCAATCCGTTTATGAAACAAGCAATGGCAAGTGATTTCAATATGACCATCTTGGATGATGACAATGAGGTTGCGTTTAGATATAACGCTTTTGACAAGACAATTATTGTGCGGGCGGTAGCTCTTCAATCTGGATCTTTTCAAGTACTGATATGGGATTCTAATAAGATACAATGGAATCGATACTGGTATGGTCCAAAAGTAGATTGTGACATGTATGGTTCCTGTGGGGCCAATGGAAACTGTGACTCTTATGACTATGCGTATTTCAAGTGTTTCTGCCTACCTGGGTTTGAACCCAAAAATCCAACAGATTGGTATCAACATTTCCATCGAACAGAGGGTTGTGTGAGGAAGAAAGGGCCATCCGTGTGTGGGAATAATGGAGAAGGCTTTGTCAGAGTAGAAAGGGTTAAAATTCCTGATACATCTTTAGCAAATGTTAATATGAATATGAGTGTGGAAGAATGTAAACAAGAGTGCTTGAGAAACTGTTCTTGTAATGCCTATGCAGCTGCAGATGTGAGAAATGGAGGAAGTGGGTGCTTAGCTTGGCATGGGACTTTGACGGACACAATGGTTTTAAGTGATGAAGGCCATGATTTATATGTTCGTGTTGATGCCACTGAACTTGCAAAATATGCTAGGAAATCAAAAGGAGAGCTTTCCAAGTTTGGGAAAGTGGGAATAGCAATGGCTTGTGTCGCTTTGATTGCTCTTCTCACCACCTTATCTGTATATTGCATTCGGAAGAGAAAAACAAGAGATGAAATTGGAGAGCAAGAATTAGAGTTAGATTCCCCAACGAATCAAGAACGATATGGTGAAGATGGAGGACAATCAAGCTTAACATTTTTCAGCATCAAAACCATAATGACTGCAACAAACAATTTCTCAAATGAGAATCAACTAGGGCAGGGTGGATTTGGTTCTGTATACAAGGGCTTACTAGATAATGGACTAGATATAGCAGTGAAAAGATTGTCACAAGGTTCTGGACAAGGGATTGGAGAGTTCAAGAATGAAATTAGATTAATTGCAATGCTGCAACATAGGAATCTTGTTAAGTTGCTTGGGTATTGCATTCATAAGGAAGAAAGGATGTTGATATATGAATACCTACCCAACAAAAGCTTGGACTTCTTTCTCTTTGACTCAAATCATAGAATGTCATTAGATTGGGACACACGTTTTCATATTATTTTTGGAATTGCTCGAGGTCTTCTCTATCTTCATCAAGATTCAAGACTGAAAATAATTCATAGAGACCTTAAAGTTAGTAATGTTCTTTTAGATGCTACAATGAATCCCAAAATTTCAGATTTTGGCATGGCTAGAATATTTGGTGAGGATCAAGTCCAAGCAAAAACTCGACGAATTGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATGGCAGGACAATATTCAACAAAGTCTGATGTTTTTAGCTTTGGTGTTCTTTTGCTGGAGATTATCAGTGGCAAGAGAAATACCTATGGTGATAAAGAAAGATCATCCCTAAATTTGATTGGGCAGGTGTGGGACTTATGGGGAGAAGGAAAAGCCTTGGACATAATGGACTCAACACTTGGCAAATCATATCCTCTTGACACATCCCTAAGGTGTATACAAATTGGGCTCTTGTGTGTGCAAGAAAGTGCCTTCTATAGACCATCCATGTTAGACGTCATTTTCATGCTTGGCAATGAAGTAAGCATACCGTCACCTCACAAGCCTGCTTTCCTATTCAATTATGAAATAAAGCATTTAGAGTCTTCATCATCGGGAGATCCTTCAATAAACGTTATGACTACTTCAATCGATGCTCGGTAA 2115 0.3967 MTPLEFSLSAQMEIWFCMSFDHPTDTLLPYARIGVNKRTGQSEFLQSWKTEDDPGTGSFSVGFNTSGKSQLFLYNNNAPWWRIGSFNGEMYVGNPFMKQAMASDFNMTILDDDNEVAFRYNAFDKTIIVRAVALQSGSFQVLIWDSNKIQWNRYWYGPKVDCDMYGSCGANGNCDSYDYAYFKCFCLPGFEPKNPTDWYQHFHRTEGCVRKKGPSVCGNNGEGFVRVERVKIPDTSLANVNMNMSVEECKQECLRNCSCNAYAAADVRNGGSGCLAWHGTLTDTMVLSDEGHDLYVRVDATELAKYARKSKGELSKFGKVGIAMACVALIALLTTLSVYCIRKRKTRDEIGEQELELDSPTNQERYGEDGGQSSLTFFSIKTIMTATNNFSNENQLGQGGFGSVYKGLLDNGLDIAVKRLSQGSGQGIGEFKNEIRLIAMLQHRNLVKLLGYCIHKEERMLIYEYLPNKSLDFFLFDSNHRMSLDWDTRFHIIFGIARGLLYLHQDSRLKIIHRDLKVSNVLLDATMNPKISDFGMARIFGEDQVQAKTRRIVGTYGYMSPEYAMAGQYSTKSDVFSFGVLLLEIISGKRNTYGDKERSSLNLIGQVWDLWGEGKALDIMDSTLGKSYPLDTSLRCIQIGLLCVQESAFYRPSMLDVIFMLGNEVSIPSPHKPAFLFNYEIKHLESSSSGDPSINVMTTSIDAR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2404g00008 704 Gene3D Phosphorylase Kinase; domain 1 358 465 - -
Pral2404g00008 704 Gene3D Hepatocyte Growth Factor 215 295 - -
Pral2404g00008 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Pral2404g00008 704 SMART ntp_6 219 298 IPR003609 -
Pral2404g00008 704 Pfam S-locus glycoprotein domain 81 194 IPR000858 GO:0048544
Pral2404g00008 704 SUPERFAMILY Protein kinase-like (PK-like) 373 680 IPR011009 -
Pral2404g00008 704 CDD STKc_IRAK 396 661 - -
Pral2404g00008 704 ProSiteProfiles Protein kinase domain profile. 390 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2404g00008 704 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 668 - -
Pral2404g00008 704 Pfam PAN-like domain 217 283 IPR003609 -
Pral2404g00008 704 PIRSF SRK 6 704 IPR024171 GO:0004674
Pral2404g00008 704 Gene3D Transferase(Phosphotransferase) domain 1 466 667 - -
Pral2404g00008 704 Pfam Protein tyrosine and serine/threonine kinase 392 598 IPR001245 GO:0004672|GO:0006468
Pral2404g00008 704 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
Pral2404g00008 704 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 683 - -
Pral2404g00008 704 ProSiteProfiles PAN/Apple domain profile. 217 299 IPR003609 -
Pral2404g00008 704 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 355 465 - -
Pral2404g00008 704 SMART serkin_6 390 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2404g00008 704 ProSiteProfiles EGF-like domain profile. 158 196 IPR000742 -
Pral2404g00008 704 CDD PAN_AP_plant 217 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2404g00008 Pral-Chr2404 81708 86066 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2404g00008 298 677 Receptor kinase-like Gene Family AT4G05200 51.047 4.72e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral2404g00008 PK_Tyr_Ser-Thr 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2404g00008 - - pcin:129285511 1095.88