Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral239g00001 GTGATTTTTCCAGCCCTTGATATACGTGTGAAAAATGTGGCACAGACATATTCCCTCGAACACAAGGGTGAAAGTAATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTACCACCCATAATAATGAAAGTTTCCTGAGAGAGTTAGCATTCTGCACGGGAGCCCTACAGACATCAGTGAGTCAACACATGGCTAAGGAAGAGCAGCAGGTGTTTCCTCTGCTCATTGAAAAGTTCTCTCTTGAAGAACAGGCATCTTTGGTTTGGCAGTTTCTATGCAGTATTCCTGTGAATATGATGGCAGTTTTTCTTCCATGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATCTGCGGAAGTGCTTAGGCAAAATAGTGCCACAGGAAAAGCTTCTTCAGAAGGTTATTTTCACTTGGATGGAAGGGAGAAGTGGTGCTCTTGCAGTTGAAAATTGTGTTGATCATTCTCAGTTTCGAGGTTCTTGTTGCCCACTAACCCACCAGATTGAGACAGTAGAGTGTGCGTGTGAGTTCACAACAACTGGGAAAAGGAAATATTCTGAATCTGGTCTAGATGTTTCTGATATTGGTGGAACACATCCTATAGATGAAATATTGCTGTGGCATGATGCAATAAAAAAAGAGTTAAGTGAGATAGTGGTGGAGACCAGGAAGATACAGCTTTGTGGAGATTTTACTATTCTATCAGCTTTTAATGAAAGATTGCAATTTATCTCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATATTTCCAGCTGTAGATGGTGAATTTTCTTTCTCTCAAGAGCATGCCGAAGAGGAAAGCCAATTTAATGACTTTCGGAGTTTGATTGAAGCTATTCAGAATGAAGAAGCAACATCTAGTTCAGACGTTGAATTTTATTCCAAGTTATGCTCACAAGCTGATCAGATAATGGAAACTATACAAAGACATTTTCATAATGAAGAAGTTCAAGTTCTTCCACTTGCTCGGAAGCACTTTAGCTTTGGAAGGCAACGTGAACTTCTATACCAAAGTTTGTGCATGATGCCTTTGAAATTGATTGAACGCGTCCTGCCATGGCTGGTAGGATCATTAACCGAAGATCAAGTGAAGGCATTTTTAAGAAATATGCAATTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGCTCGTAATGAGGGCTTGTGTTTGTCTTCAAGTGCATTGGGTTGCTGTCCTGCTCAAAGACTTGCTGACATTGAAGAAAATTTTGTCCAGTCATCCTGTCCTTGTGGCACTTCAGCATTATCGGTTAGGGATTACTCATTGCTAGGTGAACTAGATGAGAACAAAAGACCAGTTAAGCGGAGCATATTGGAATTATGCAAGAATGGAGATTTCTCTGAAACTTCAGAGTCTGAAAGTATTGAGAAACAATGTTGTAGTGCGAGGTCTTGTTGCGTACCAGGTTTAGGAGTAAGCAGTAATAATTTGGGGCAAAGCTCTCTTTCTACTGTCAAGTCCTTGCGCTCCCTGTCTTTCAACTCTTCTGCTCCATCTATAAATTCCAGTCTTTTCATATGGGAAACAGATAATAACTCGTGTGATAACTCTGCAGAAAGACCCATTGATACTATATTTAAATTTCACAAAGCTATACGCAAAGATTTGGAGTATTTAGATATTGAGTCTGGAAAACTTAGTCATGGTGATGAGACAATTCTTCGGCAGTTTACTGGAAGATTTCGTCTTTTATGGGGTCTATATAGAGCTCACAGTAATGCTGAAGATGATATCGTATTTCCAGCTCTGGAATCCAAAGAATCACTTCATAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCCCATGTTCTTTCTGAGCTCTCTGTCCTTCATGAAGACTTTCAGATGACCAGTGTGTCTACCGCAACTTCTGATGTCAGTTTTAGAGATAATAACAGAAAGTACAATGAGCTAGCAACTAAACTTCAAGGGATGTGCAAATCCATAAGAGTGACACTGGATCAGCATATTTTTAGGGAAGAGCTTGAGCTCTGGCCATTGTTTGGGAGACATTTTACTGTCGAAGAACAAGACAAGATAGTGGGGCGGATAATTGGGACTACAGGTGCAGAAGTTCTACAATCTATGCTACCGTGGGTAACTTCTGCACTTACTGAGGATGAACAGAACAAAATGATGGATACATGGAAGCAGGCAACAAAAAATACTATGTTCAATGAATGGCTTAATGACTGCTGGAAAGAAAGTCCATCGGCTATATTGCAGAGAGAAACACCAGAGCAAACTGCTTCTCTAAAAGGTACTGAACATCAGGAAAGCATGGACCTGAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAGCTTGAGTCAGAGATCCGGAAGGTTTATCAAGATTCAACTCTTGATCCAAGAAGAAAAGCATATCTTGTGCAGAATCTAATGACTAGTCGATGGATAGCTGCACAACAAAAGTTACCTAAAGCTAAAGCTGGGGATTCTGCTGATGGGGAAAGAATTGAAGGACGCTCAGCATCATTTCAGGACCAGGAGAAACAAATATTCGGATGTGAACACTATAAAAGAAACTGCAAACTTAGAGCTGCATGCTGTGGCAAGTTGTTTGCATGTAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACTTCAGAAATGATGTGTATGCGTTGCTTGACTATACAGCCAGTTGGGCCAATATGCATGACACCTTCATGTAATGGATTTTCAATGGCCAAATACTATTGCAACATATGCAAATTTTTTGATGATGAAAGGAATGTATATCACTGCCCATTTTGCAATTTGTGCCGTGTGGGGAGGGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAACTGCTGCCTGGGGATGAAATCGGCATCTCACAAGTGCCTGGAGAAAGGGTTAGAAATGAATTGCCCTATTTGCTGTGACTTCTTATTTACATCAAGTGCTACAGTCAGAGCTCTACCTTGTGGTCATTATATGCATTCAGCTTGCTTTCAGGCTTACACTTGTAGTCACTACACGTGTCCAATCTGCAGCAAATCATTGGGTGACATGGCGGTTTACTTTGGCATGCTTGATGCTTTATTGGCTGCTGAGGAGCTCCCAGAAGAGTACAGGGGCCGTTATCAGGACATACTTTGCAATGACTGCGAACGAAAGGGGTGTTCTCCCTTCCACTGGCTGTATCACAAATGTGAATTTTGTGGCTCTTACAATACCCGTGTGATCAAGACGGAGCCATCAAATTCCCGTTGCTCTTAG 3408 0.409 VIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSTTHNNESFLRELAFCTGALQTSVSQHMAKEEQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAVFLPWLSTSISPDESQDLRKCLGKIVPQEKLLQKVIFTWMEGRSGALAVENCVDHSQFRGSCCPLTHQIETVECACEFTTTGKRKYSESGLDVSDIGGTHPIDEILLWHDAIKKELSEIVVETRKIQLCGDFTILSAFNERLQFISEVCIFHSIAEDKVIFPAVDGEFSFSQEHAEEESQFNDFRSLIEAIQNEEATSSSDVEFYSKLCSQADQIMETIQRHFHNEEVQVLPLARKHFSFGRQRELLYQSLCMMPLKLIERVLPWLVGSLTEDQVKAFLRNMQLAAPATDSALVTLFCGWACKARNEGLCLSSSALGCCPAQRLADIEENFVQSSCPCGTSALSVRDYSLLGELDENKRPVKRSILELCKNGDFSETSESESIEKQCCSARSCCVPGLGVSSNNLGQSSLSTVKSLRSLSFNSSAPSINSSLFIWETDNNSCDNSAERPIDTIFKFHKAIRKDLEYLDIESGKLSHGDETILRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYMLDHKQEEKLFEDISHVLSELSVLHEDFQMTSVSTATSDVSFRDNNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQNKMMDTWKQATKNTMFNEWLNDCWKESPSAILQRETPEQTASLKGTEHQESMDLNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAKAGDSADGERIEGRSASFQDQEKQIFGCEHYKRNCKLRAACCGKLFACRFCHDNVSDHSMDRKATSEMMCMRCLTIQPVGPICMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGMKSASHKCLEKGLEMNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRGRYQDILCNDCERKGCSPFHWLYHKCEFCGSYNTRVIKTEPSNSRCS 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral239g00001 1135 Gene3D nmb1532 protein domain like 204 351 - -
Pral239g00001 1135 Gene3D nmb1532 protein domain like 1 93 - -
Pral239g00001 1135 Gene3D nmb1532 protein domain like 543 778 - -
Pral239g00001 1135 FunFam Zinc finger protein BRUTUS 545 770 - -
Pral239g00001 1135 SUPERFAMILY CHY zinc finger-like 883 946 IPR037274 GO:0008270
Pral239g00001 1135 SMART ring_2 1019 1060 IPR001841 -
Pral239g00001 1135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1014 1063 IPR013083 -
Pral239g00001 1135 ProSiteProfiles Zinc finger RING-type profile. 1019 1061 IPR001841 -
Pral239g00001 1135 FunFam Zinc finger protein-related isoform 1 1014 1063 - -
Pral239g00001 1135 ProSiteProfiles Zinc finger CHY-type profile. 883 952 IPR008913 GO:0008270
Pral239g00001 1135 Pfam Ring finger domain 1018 1060 IPR001841 -
Pral239g00001 1135 SUPERFAMILY Zinc hairpin stack 956 1012 IPR037275 -
Pral239g00001 1135 Pfam CHY zinc finger 890 965 IPR008913 GO:0008270
Pral239g00001 1135 SUPERFAMILY RING/U-box 1016 1071 - -
Pral239g00001 1135 CDD RING-H2_Pirh2-like 1018 1061 - -
Pral239g00001 1135 CDD Hr-like 1 73 - -
Pral239g00001 1135 CDD Hr-like 552 705 - -
Pral239g00001 1135 Gene3D - 1090 1130 - -
Pral239g00001 1135 Pfam Zinc-ribbon 1066 1123 IPR039512 -
Pral239g00001 1135 Pfam Hemerythrin HHE cation binding domain 550 706 IPR012312 -
Pral239g00001 1135 Pfam Hemerythrin HHE cation binding domain 201 335 IPR012312 -
Pral239g00001 1135 CDD Hr-like 204 333 - -
Pral239g00001 1135 ProSiteProfiles Zinc finger CTCHY-type profile. 955 1018 IPR017921 -
Pral239g00001 1135 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 593 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral239g00001 Pral-Chr239 176 9569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral239g00001 541 757 C2H2 Transcription Factor Family AT3G18290 29.680 1.17e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral239g00001 K16276 - gmx:100801725 1934.46