Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2399g00006 ATGGAAGGTTTCTTTCCCGACAAATTTCTGGACGATACTTTCTGTGATGAATCTTTTCAAAATCAGAATGATTTTCTTCAGTTTACAGAGACTGAGACTCGCCAAGAAAGCTTCCATGTCGGATCGAGTTCCCAGAACCCTATTGTCGAAGACGAGCTTTCCGCCGCCGCCCCCGCCGCCGCCGCCGCCGCTCCTCCTCCTGCTCCTGCTGCCGCTAATAAGAGTGATTTTCTTCAGTATAGTGACTGTCTCAGAGCTGTGTTCGGGCAAGAAAGTTCTCAGAATGTGTTGAATTCAAATGAAGTTGCTTTTGTTCCATACAATGACGTACCAGGAACGGGATCGGAATCGGGGCAAGAAAATTCACGCGGCATTAACGCGAAAGATCGTGGCCATGGAGCTTCTCCTGCTGGGAATCGAAGTGATTTTGTTCAATACAGAGAGCTACCCAGAACAGAGTATAGTCAGGGAAGTTCAGATGTTATGAACATGAGAAGGAGGATGATTGATTACTTGAACAGTTGTCCTGCAGAGAGAGGCAACATGGCAGAGTACGAAAGAGAACGAGGTTTCAGGCACATGATTAACGAGAGAATGAGAAGGCAGAGACAGAGGCAGTGTTGCTTGGCCTTGCATTCTATATTACCATTTGGAACCAAGAACGACGTTAATTCGGTGGTTCAAATGGCAGCGAAGGAGATCCAGAAGCTACAAGCTTGCAGGGATGAATTGAAGAAGCAAAATGCAGAGCTTGAAGAAAAACTTAACAGTGAACAAGGCAACAGAGTTGAGTTGAGGCTGGCTCATTCCACGTCTCCAATAGATTCAGTGCTTGAGACTCTTCAATTATTGACGGATCTTGGGATGAATACCAGAAGCATCACCTCAAATTTCTCTCATCAGGAATTGTTTGCCTTGTTAGAGATGCATGCTAATAAGATGGGAGGAGCCGAAGTAGAAAGGGGAAATGAGGATGCGGAGAACGAAAATGAATGGAAGCTTCCTTCTCATGACCGAGAAATTCTCAAAAGGCAGCGACTCTGA 1044 0.4579 MEGFFPDKFLDDTFCDESFQNQNDFLQFTETETRQESFHVGSSSQNPIVEDELSAAAPAAAAAAPPPAPAAANKSDFLQYSDCLRAVFGQESSQNVLNSNEVAFVPYNDVPGTGSESGQENSRGINAKDRGHGASPAGNRSDFVQYRELPRTEYSQGSSDVMNMRRRMIDYLNSCPAERGNMAEYERERGFRHMINERMRRQRQRQCCLALHSILPFGTKNDVNSVVQMAAKEIQKLQACRDELKKQNAELEEKLNSEQGNRVELRLAHSTSPIDSVLETLQLLTDLGMNTRSITSNFSHQELFALLEMHANKMGGAEVERGNEDAENENEWKLPSHDREILKRQRL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2399g00006 347 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 19 321 IPR044658 -
Pral2399g00006 347 Pfam Helix-loop-helix DNA-binding domain 192 238 IPR011598 GO:0046983
Pral2399g00006 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 252 IPR036638 GO:0046983
Pral2399g00006 347 Gene3D - 188 266 IPR036638 GO:0046983
Pral2399g00006 347 CDD bHLH_AtbHLH_like 186 244 IPR045239 -
Pral2399g00006 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Pral2399g00006 347 SMART finulus 194 243 IPR011598 GO:0046983
Pral2399g00006 347 MobiDBLite consensus disorder prediction 318 347 - -
Pral2399g00006 347 Coils Coil 227 268 - -
Pral2399g00006 347 MobiDBLite consensus disorder prediction 110 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2399g00006 Pral-Chr2399 12319 14533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2399g00006 158 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 39.873 1.14e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2399g00006 - - pcin:129309902 476.863