Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2390g00010 ATGGATTGTTACTTCCGTGTCGATAACGGTGATGCCCATCTGCCTCCTGGGTTTCGCTTCCACCCAACTGATGAGGAGCTCATTACTTTTTACCTCCTCAAGAAGGTTCTTGACAACACCTTCACAGGAAGAGCCATTGCTGAAGTTGATCTTAACAAGTGTGAGCCGTGGGAGCTTCCTGAGAAGGCGAAGATGGGTGAGAAAGAGTGGTACTTCTTCAGCCTCCGAGACCGAAAGTACCCAACTGGCCTGCGCACTAATAGGGCTACAGAAGCTGGATACTGGAAGGCCACTGGAAAAGACAGGGAGATTTATAGCTCCAAAACTTGCTGTCTCGTGGGCATGAAGAAGACTCTGGTTTTCTACCGAGGTAGGGCTCCGAAAGGCGAAAAGAGCAACTGGGTCATGCATGAGTATCGTCTTGAAGGAAAATTTGCTTATCATTACCTTTCACGCAGCTCCAAGGATGAATGGGTCATCTCGCGTGTTTTCCAGAAGAGTCTCTCCTCTGGGAACGGCAGCTCCGCCGTGTCTTCCGCCAGTGGCTCCAAGAAGACTAACTCAAGAATGAGCTCTTCTGTTAACATGAGCCTCTACCCAGAACCCAGTTCTCCATCCTCCATTTACCTACCTCCTCTGCTTGACTCGTCTCCTTACGCCGCCGCCAACGACCGTGACAGCTGCTCCTATGACGGCAGCAGCACTACTCCGAGGGAGCACGTGTCCTGTTTCTCCACATTCTCTGCGTCTGCTGCCGCCAACAACCTCCCCAATGTTAGCTATGAACTTGCTCCTCCTCCGCCGCCGCCGCCGCAGCAAATAGCTCTGGACCCCTTTGCTCGATTCCAGAACAACGTTGGTGTGCCTGCGTTTCCAAGCCTGAGGTCACTGCAGGAGAATCTTCAACTGCCTTTTCTACCTCCGGCCATAGCTCACGGTGGCTCCGGTGGAGACATGAACGGATGGGCCAAGCCGGAGGAGCAGACTGTAGCGGGTGGTGGTTCTGGCATGGCGCTGTGTCCGTCGGAGCTTGATTACGTGTGGGGTGGCTACTAG 1056 0.535 MDCYFRVDNGDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSLSSGNGSSAVSSASGSKKTNSRMSSSVNMSLYPEPSSPSSIYLPPLLDSSPYAAANDRDSCSYDGSSTTPREHVSCFSTFSASAAANNLPNVSYELAPPPPPPPQQIALDPFARFQNNVGVPAFPSLRSLQENLQLPFLPPAIAHGGSGGDMNGWAKPEEQTVAGGGSGMALCPSELDYVWGGY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2390g00010 351 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Pral2390g00010 351 SUPERFAMILY NAC domain 11 166 IPR036093 GO:0003677|GO:0006355
Pral2390g00010 351 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Pral2390g00010 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 220 - -
Pral2390g00010 351 FunFam NAC domain-containing protein 100-like 23 170 - -
Pral2390g00010 351 MobiDBLite consensus disorder prediction 168 197 - -
Pral2390g00010 351 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2390g00010 Pral-Chr2390 33773 36424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2390g00010 1 348 NAC Transcription Factor Family AT5G53950 55.181 4.97e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral2390g00010 NAM 2.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2390g00010 - - qsa:O6P43_029134 448.358