Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2390g00005 ATGGATAATTTCTTCTTGTCATTCCAACACCAGAAACACCCAGAGAAGCTCAATAAAAAGAGGCTGACTGAAGATCAAGCGGCCATCCTAGAGAAAAGCTTTGCCTGCAGAAAGAAGTTGGAGCCAGAGCAGAAATTGCAGCTCTCAAAACAACTGGGTGTGCCTCCGAGACAAATTGCAGTATGGTACCAGAATAAGCGAGCTCGCTGGAAGACACAGAGTCTTGAGGAGGACTATGGTGCCTTGCAGTTGAAGCTAGAGAATCTCATGGCAGAGAAGAAACAGCTTGAGAGAGATGTGGAAAGGCTCAAGGCCGAGCTGAAGGAGGCCAAAGAGATGTTGCTCTTCATGAAAGGTGAAGCAGAAGCTAAAACTCACAGTTCTTTCGCTGAGTTTTCATATAATTGTGAAGAGGTTATGCAGGTTGAAGAGCTTTATGCTTGTTTCATGGGTCCCAATAAGTTCCTCTGA 471 0.4522 MDNFFLSFQHQKHPEKLNKKRLTEDQAAILEKSFACRKKLEPEQKLQLSKQLGVPPRQIAVWYQNKRARWKTQSLEEDYGALQLKLENLMAEKKQLERDVERLKAELKEAKEMLLFMKGEAEAKTHSSFAEFSYNCEEVMQVEELYACFMGPNKFL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2390g00005 156 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 14 128 IPR045224 GO:0003700
Pral2390g00005 156 SUPERFAMILY Homeodomain-like 16 81 IPR009057 -
Pral2390g00005 156 Pfam Homeodomain 19 71 IPR001356 GO:0003677
Pral2390g00005 156 Coils Coil 72 120 - -
Pral2390g00005 156 CDD homeodomain 19 74 IPR001356 GO:0003677
Pral2390g00005 156 ProSiteProfiles 'Homeobox' domain profile. 13 73 IPR001356 GO:0003677
Pral2390g00005 156 ProSitePatterns 'Homeobox' domain signature. 48 71 IPR017970 GO:0000981|GO:0006355
Pral2390g00005 156 Gene3D - 7 80 - -
Pral2390g00005 156 SMART HOX_1 15 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2390g00005 Pral-Chr2390 18861 19717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2390g00005 19 151 Homeobox Transcription Factor Family AT5G53980 47.761 1.60e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral2390g00005 Homeodomain 5.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2390g00005 - - gmx:100781030 157.532