Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2390g00001 ATGCGATTATCGCCCGCTTCCGGTTCGTCATTGGACCAGAGGAGACTTGATCGATCGGGGTCGCGGCTTCGGAAGAAGCACAAGAGGCTAGACGCAATATGCGAAAGGGAATATAATCGGAACCATAGTGAATTGAATGATGACGGTGATGGGGCTGGTACTTCGGGCGCTGATACAGAGCTACGCCGCAGCTCAAGGGTTCGGCGAGCTCCAGTTGTGCTCGATGCCTCTCCTCCCCCTAAGAAACGGCGGAAGTTAGGTAAGAATGTAATGCTGAGTAGTGTGAGCGATGATAGGAGCCCAGCACATGCGAACCAGAGTCCTGGGGAGGTAGAGTGTCCAGGAACATGGAGTTCAAGGTTGAGATCCAGGGTTAAAAATGTAGGTTTCACGGTGAAGGGGCAGAGGGAATCCCCGAGTGGTAAAAGGAAGCTGTTTGAGGATATGGACGATAGCAGGGACAATGGAAAACCGGAGGTTCCAGAGATTAATAAGAAAGAGGAATTAGAAGGTGGGATGCCGAAGGTCGTTAAATCAAAAAGACCAGGGAGGATCAAAGCAACAAAACATGCTGAAGAGCATACACATAATGAGTCTCATGGCAACTTGGATGAGAGCAAGAGTCAAGAAGTGGAGCTTATTTTGAGCCAAGATGAGGAGGATGCTTCAATTTCAGGATCTAAATTGTCTGATGAGAATGTAGTGGAAATGGTGGATGGGGATACCTCTCCAAAGATGGAAACCAGCCAGAGAACCATATGTGATAATTTGCAGTCACAGGAGTTTAATGGTAATGTTGAATTGCCTCCAGTGTTACATGTAGATAAATCTGTTGATCAATTGGAGAGTGCGAAAGAAGGTGAAAATAGAAGAGACGCTGTAGAAATTGTTGAGAATCTGACAAAGCAAGTAGAAAATGAAGGATCTATCAATAAGGAATCTGCAGCTGACGAGAAGACCTTGCAAGATGAAAATATTGTAAAAATAGACAAGCCCAAACAAGCCTCAAATGATATAACTGACCAACCACGTATTAGAGAAGGCAGAAGGTGTGGTTTATGTGGTGGAGGGACTGATGGTAAGCCTCCAAAAAGGTTAGTTCAGGATAATGGTGAGAGTGAGAATGAGGCATATAGTGGGTCATCAGCATCTGAGGAGCCTAATTATGATCCTTGGGATGGTTTTGGTGATGAACCTGGCTGGCTTGGGCGTCTCTTAGGTCCTATTAACGATCGCTATGGTATTGCTGGGATATGGGTTCATCAGCACTGTGCTGTTTGGAGTCCAGAGGTGTATTTTGCTGGCTTGGGATGCTTAAAAAATGTGAGGGCTGCTCTTTGCAGAGGAAGGGCATTGAAGTGCACACGTTGTGGGAGACGAGGGGCTACTATTGGTTGTCGGGTTGATCGGTGTCCAAAGACGTATCACTTGCCTTGTGCAAGAGCAAATAGTTGCATCTTTGATCATCGCAAATTTCTTATAGCCTGTACAGATCATAGACATCTCTTTCAACCCCAGGGTAATCAATATTTAGAGCGGATAAAGAAATTGAAAGCTAGAAAGATGAAGTTGGAGGTGAGAAAGCTTTCAAATGATGCTTGGAGAAAGGATATTGAAGCAGAAGAAAAATGGTTGGAGAACTGTGGTGAGGATGAGGAATTTTTGAAACGTGAGAACAAGAGGCTTCATCGTGATTTATTGAGGATAGCCCCCATATACATTGGTGGTCCTGACTCTGACGGTGAAAAATCATTTCAGGGTTGGGAATCTGTTGCTGGGCTTAAGGATGTTATCAGTTGCATGAAAGAAGTTGTCATTTTACCTCTGCTGTATCCTGAGTTCTTTGATAATTTAGGTCTTACACCTCCAAGGGGTGTTCTTTTGCATGGATATCCTGGGACAGGAAAAACTTTAGTAGTGAGAGCATTGATAGGTGCGTGTGCTCGTGGTGATAAACGGATTGCATATTTTGCTCGTAAAGGTGCGGATTGCTTGGGGAAATATGTGGGTGATGCTGAACGCCAACTGAGACTACTATTCCAGGTTGCTGAAAAATGTCAACCTTCTATAATATTCTTTGACGAGATAGATGGATTGGCACCAAGCCGCACTAGGCAGCAAGATCAGACACATAGTTCTGTTGTGTCTACACTGCTTGCTCTTTTGGATGGTTTGAAATCTAGGGGTTCAGTTGTAGTCATAGGTGCAACAAATCGTCCTGATGCTGTTGACCCAGCACTTAGGCGTCCTGGAAGATTTGATCGTGAAATTTATTTTCCATTGCCATCAATGGAGGACAGAGCTTCCATTCTCTCGCTTCACACACAGAGGTGGCCAAAACCGATCACTGGATCCTTACTTGAGTGGGTTGCTAGAAAAACTCCCGGATTTGCTGGGGCAGATCTCCAGGCTCTCTGTACCCAAGCTGCCATCAATGCTTTGAAGAGAAACTTCCCTTTGCAAGAAGTGCTGTCTGCAGCTTCAGAGGAAGACTCTGGTGGTAAGCGCCTTCCTCTTCCGTCCTTTGCGGTGGAGGAAAGGGACTGGTTGGAAGCTCTATCATGTGCACCTCCTCCATGCTCCCGGAGAGAAGCTGGGAATGCTGCAAATGACATAGTATGCACTCCTCTTCCCACCCACCTCAAACCTTGTTTGTTACAACCATTATGCACTCTGCTTGTATCTCTGTATCTTGATGGACGCCCATGGTTGCCACCTCCTATGTTTAAAGCTGTAACAAAGATTAAAAATGCTATGATTTCTGCTCTGGACCAAAAGAAAATTTCTACTGATCAGTGGTGGTTGCATGTTGATGATTTTTTTCAAGACACAGATTTTGTTGCCAATTTAGGGAGGGAACTCACCTGTGCTGGCATTTTATCTGCAAATGATGGTCATGATGCTGGTTCTTGTGATACTGATGGTGAGGTGAAACTTGAACCTTCTAGAATGCACCATGTCAGCACATGTAGTGGTTTATTATCAAATATGTCATTTAAGATGATGAAGAAATCAGGATTTCGGATATTGATTGCTGGAAATCCCAAATCTGGTCAGAGGCACCTTGCTTCCTGCCTGCTGTACTGCTTTGTTGGTAATGCTGAAATTCAGAAGATTGATATGGCAACTATTTCACAAGAAGGACATGGAGACGTGGTACAAGGAATTTCACAAATACTGATGAAATGTGCGGGTGTGCAATCGTGTGTAGTCTTCATGCCAAGAATTGATCTGTGGGCTGTGGAGACTCATTTTCAGGTTGCTGAAAATTCTGTTTACTGCTCCATGAATGATCAAGTTTCTGAGATGGAAGAGGCTTGTTTAACACGGAGTCAGGTTGTTGAAAAGAAAAATGAATTTGATTCAAAGAGAAGGAAACCGGTAGATATGGCCCAAGGTCAAGTCATCTTAAAGGCTTCACAGGCCTGGATGTCATTTATTGAGCAGGTGGAGTCCATGGGTGCATCTACATCCTTGATGATTCTGGCTACTTCAGATATTCCATATTCGGAGCTTCCATGTAAAGCAAGGGAGTTCTTTTGGAGTCATCAATCGAGCTGCAGCCAGTCTGCTTCATTAGTGCAGACAGTGCCTCGTTTTTCTGTGCAGACTGGGGGGGACTTTAATCATGATGTCATGATCAATCTATCTGCAGTGGAGCTGATGAGAAATGTAATTGAGCAGCTGGTTCAATTGGTCCACAGAAAATCTCATTTGCATATTGGAGCCAGGAGGCACTTAACCTATGATTCAGTTCAAGGCTGTAAAGATATGACATGTCTGGGAAAAGATGATGGATCAGTCAATGGTGATAAGGTTAAAGTCCAACTTCCTGAACTCTCTACTAAAGTTCCACAGCCACCTAACAGTAGGCCACTGAAGCAAAAGTCTACCCTGTTGTTGGCAATATCAACATTTGGTTATCAAATTATTCGGTTCCCTCATTTCGCAGAACTTTGTTGGGTCACATCAAAACTCAGAGACGGTCCTTCTGCTGATGTAAGTGGGCCTTGGAAGGGTTGGCCTTTCAATTCCTGCATAATTCGTCCTGGTAACCTGCAAGACAAGGTGGCTAATTCTTGCAGCAATAGCAATATTAAGAACAAAGAAAAATCTGGTATTGTCAGAGGCCTGGTGGCTGTTGGTTTATCAGCATACAGAGGTGCATATACATCTGTTAGGGAAGTTTCTAGTGAGGTACGCAAGGTTCTTGAGATATTAGTTGGGACAATCAACACAAAAGTTCAAGCTGGTAAAGAAAGATATCAATTTCTTCTTCGTATTCTATCGCAAGTGGCTTATTTGGAAGATATGGTCAATAATTGGGCCTATTCCTTGTTGAGTCTTGAGCAGGACTCCCCAGACGTGGCAGTAAAACGTACATCAACTGGTGTCGGGTCATTAAACGGCCATGAAAACCTACAAGCTGAAGATGGGGATTGCCAATTGGTTGCTCCCATGGGAGATCACGAGCCAGAGAAGCTGGAGAAAAAGTCCAATGTGATGTCCGCCAAGCCACCTGAATCTCTTGCCTTGAATAACACAAATGATAATGTGGATAATGTTGATCATGATGGCAATGGCAATGTTTCAAAAGGATCTCCACAAAATAGTTCTTTTTCAGATGATCATGTTAACAACCCTGCTGCCATGAGCCAGCTCGTTGATCCAGTTACATTTGTGGAGAATGGCACACTATCTAAAGTATCTAAATCAGGAACAACGGGAAATCCTGCAATGATAAATGGAGAAATTGGGCCTTTAGAAGGCTCAAAACTCGCTCACACTGTCTCTCTTTCAGGAAATGAAGAGTTCAGATTGTCAAAAGGCTCAAATGGATCCCCATCTACCCACTCTGTTGCCCTTTCTGATAATGAACTTCACAGTGCCTGTCAAGCAGATG 4903 0.4403 MRLSPASGSSLDQRRLDRSGSRLRKKHKRLDAICEREYNRNHSELNDDGDGAGTSGADTELRRSSRVRRAPVVLDASPPXPKKRRKLGKNVMLSSVSDDRSPAHANQSPGEVECPGTWSSRLRSRVKNVGFTVKGQRESPSGKRKLFEDMDDSRDNGKPEVPEINKKEELEGGMPKVVKSKRPGRIKATKHAEEHTHNESHGNLDESKSQEVELILSQDEEDASISGSKLSDENVVEMVDGDTSPKMETSQRTICDNLQSQEFNGNVELPPVLHVDKSVDQLESAKEGENRRDAVEIVENLTKQVENEGSINKESAADEKTLQDENIVKIDKPKQASNDITDQPRIREGRRCGLCGGGTDGKPPKRLVQDNGESENEAYSGSSASEEPNYDPWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLPCARANSCIFDHRKFLIACTDHRHLFQPQGNQYLERIKKLKARKMKLEVRKLSNDAWRKDIEAEEKWLENCGEDEEFLKRENKRLHRDLLRIAPIYIGGPDSDGEKSFQGWESVAGLKDVISCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGYPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPSRTRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSMEDRASILSLHTQRWPKPITGSLLEWVARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSAASEEDSGGKRLPLPSFAVEERDWLEALSCAPPPCSRREAGNAANDIVCTPLPTHLKPCLLQPLCTLLVSLYLDGRPWLPPPMFKAVTKIKNAMISALDQKKISTDQWWLHVDDFFQDTDFVANLGRELTCAGILSANDGHDAGSCDTDGEVKLEPSRMHHVSTCSGLLSNMSFKMMKKSGFRILIAGNPKSGQRHLASCLLYCFVGNAEIQKIDMATISQEGHGDVVQGISQILMKCAGVQSCVVFMPRIDLWAVETHFQVAENSVYCSMNDQVSEMEEACLTRSQVVEKKNEFDSKRRKPVDMAQGQVILKASQAWMSFIEQVESMGASTSLMILATSDIPYSELPCKAREFFWSHQSSCSQSASLVQTVPRFSVQTGGDFNHDVMINLSAVELMRNVIEQLVQLVHRKSHLHIGARKXHLTYDSVQGCKDMTCLGKDDGSVNGDKVKVQLPELSTKVPQPPNSRPLKQKSTLLLAISTFGYQIIRFPHFAELCWVTSKLRDGPSADVSGPWKGWPFNSCIIRPGNLQDKVANSCSNSNIKNKEKSGIVRGLVAVGLSAYRGAYTSVREVSSEVRKVLEILVGTINTKVQAGKERYQFLLRILSQVAYLEDMVNNWAYSLLSLEQDSPDVAVKRTSTGVGSLNGHENLQAEDGDCQLVAPMGDHEPEKLEKKSNVMSAKPPESLALNNTNDNVDNVDHDGNGNVSKGSPQNSSFSDDHVNNPAAMSQLVDPVTFVENGTLSKVSKSGTTGNPAMINGEIGPLEGSKLAHTVSLSGNEEFRLSKGSNGSPSTHSVALSDNELHSACQAD 1636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2390g00001 1636 SMART AAA_5 623 764 IPR003593 GO:0016887
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 1489 1503 - -
Pral2390g00001 1636 Gene3D - 588 864 IPR027417 -
Pral2390g00001 1636 Gene3D - 763 855 - -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 1462 1555 - -
Pral2390g00001 1636 ProSiteProfiles Extended PHD (ePHD) domain profile. 391 501 IPR034732 -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 1508 1550 - -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 348 394 - -
Pral2390g00001 1636 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 347 503 - -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 187 215 - -
Pral2390g00001 1636 Pfam ATPase family associated with various cellular activities (AAA) 627 762 IPR003959 GO:0005524|GO:0016887
Pral2390g00001 1636 Pfam AAA+ lid domain 788 820 IPR041569 -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 138 178 - -
Pral2390g00001 1636 ProSitePatterns AAA-protein family signature. 732 750 IPR003960 GO:0005524|GO:0016887
Pral2390g00001 1636 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 763 855 - -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 1606 1636 - -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 373 387 - -
Pral2390g00001 1636 Pfam PHD-like zinc-binding domain 422 501 - -
Pral2390g00001 1636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 503 IPR013083 -
Pral2390g00001 1636 PANTHER AAA DOMAIN-CONTAINING 25 1529 IPR045199 -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 132 250 - -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 1 119 - -
Pral2390g00001 1636 Coils Coil 508 528 - -
Pral2390g00001 1636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 855 IPR027417 -
Pral2390g00001 1636 MobiDBLite consensus disorder prediction 28 47 - -
Pral2390g00001 1636 FunFam ATPase family, AAA domain-containing 2 586 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2390g00001 Pral-Chr2390 50 7460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2390g00001 589 824 Calmodulin-binding Proteins AT3G56690 41.176 2.95e-45 177