Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2389g00001 ATGACATCCTCTTACGTTTTAATTTCCGAGGAGTTGATGGAAGACATGTTCGAGATCAGTTTCACAGTCATCGAACATGGGGTTTCACCATTCACCGGGCTTCCTCGAAGGATACCTCTTGAAGTGTTTGAATCTCCAATCACAATGCCATGTGAAGAATTAATTCGAGATGTTCCATTATTTCTTCGTCAAAACGTAGCCAACTATATTTCCGAAAACAATATTGAGCCATTGGCTTCTGAAATCATATCTTATTACCAACAAGTAGTCCAACGTACCGCCATTAATGGAACTACTCGTTATTATCACCACTTAATACCTCTGATCGTGTATCTTGATGTCAATACTACTTCTGATCATGGCTTAATTCCTTTGTCTTTTCATCTTCAAACTACTGCTCTATATGCAGATAATGAGTACGATGAATATATGGTATATACAGAAATTTATCATCCCACAGAGCCATCTATTCATCATCAACAATCTTCTGATTCTGATGAATCAACAGAAGTGAATCAAGTCATAGAGCAATCCATGCAACAACTGTTTATAGTTCCAGCAGCAGAAAAAGCTATGGCCTTACTTAAGAGGATGGAATTGTCCAGTGATGACATGAAGACAAGCCAATGTAGCATTTGCTTAGAAAGTTTTGATGATGATGATGAAGATGTTTCAGCTTTGCCTTGTCACCATTTTTTTCATAATGATTGTATTGCAAAATGGCTAAAAACAGGCCATACATGTCCGTTGTGTCGCTTTCAATTCCCTGTAGAGTAA 777 0.3758 MTSSYVLISEELMEDMFEISFTVIEHGVSPFTGLPRRIPLEVFESPITMPCEELIRDVPLFLRQNVANYISENNIEPLASEIISYYQQVVQRTAINGTTRYYHHLIPLIVYLDVNTTSDHGLIPLSFHLQTTALYADNEYDEYMVYTEIYHPTEPSIHHQQSSDSDESTEVNQVIEQSMQQLFIVPAAEKAMALLKRMELSSDDMKTSQCSICLESFDDDDEDVSALPCHHFFHNDCIAKWLKTGHTCPLCRFQFPVE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2389g00001 258 ProSiteProfiles Zinc finger RING-type profile. 210 252 IPR001841 -
Pral2389g00001 258 SMART ring_2 210 251 IPR001841 -
Pral2389g00001 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 157 256 - -
Pral2389g00001 258 CDD RING-H2_PA-TM-RING 209 252 - -
Pral2389g00001 258 SUPERFAMILY RING/U-box 209 256 - -
Pral2389g00001 258 Pfam Ring finger domain 209 252 IPR001841 -
Pral2389g00001 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 257 IPR013083 -
Pral2389g00001 258 SMART ringv_2 209 252 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2389g00001 Pral-Chr2389 5562 6338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2389g00001 170 258 C3H Transcription Factor Family AT1G18760 33.696 2.35e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2389g00001 - - pcin:129298469 229.565