Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2386g00005 ATGGCAAACTTCGATCATGATCTCATCAAAGATGTAGATGATTCTAAAGATACCTGGTGTATTGTTGCGAGAGTGCTGAGAAAATGGATTATGGCTAAAAAGACACCGCCTTTTGATATTTTTAAAGTAGGGATGATTTTAGTTGATGAACAGGGGTATAGAGTTGAAGCTTTTATGTCCCAGAAAGCACAATTACAAAGATACATGGATGAAATAACAGAGGGTGAAGTATATCAGTTTGAGAACTTTGTAGCTGTGCCCAACAATGATGCTTTCAAACTTTGTCATCACACTTGGAAGATTCGTTTCCACTCCATGACGTTTTTCCAAAAGCATGACTTAGCAGTCCCTTTAAATGCATTTAACTTTGTTCCAATAAAGGATATTGCTGACTATAATGCTACAAATTATGAATTGATTGATGTCATTGGGTTCCTTCAAGCATTTGGAAACTTGGTTGACCACAAAAAAGACTCACAGACCATAAAGACACTGAATTTCACCATCGCTGATCATAACCAAATCCCCATTAACGTGGCTCTTTTCGGAGATGTGGCAATCAATGCATTTGAAGCTAGGACTGATGATTTGGAAGTTCCTACTGTAGTTGTCATCCGATTTGCAAGGATATCAACAACTAAAGGTTACGGACATATAACTAATGCTTTCCATGCTACAAGAGTTTTGTTCAATCCAGACCTCCCTGAAGTCAGAGAATTAATTGCCAGACTCGGTGAGACACCTGGAGCAAGTCAGAACTTCTCACAAGTTTCATCTACCGAAAGTCAAATTGTCACCAAGGTCACCATCCAGAAAGTTGAGAGTGAGTATGGTTGGACCTATGATGGATGTCCATGCGATAAAAAACCAGTGCATGTTGATGATAAATTGATGAAGTGTACTTCTTGTAATCAAGAAGTGCTTAAGACTGAACCCAAGTTCAAAGTCCATTACAAAGTATTTGATTCCACTGGACAATGTTCGATGCTTTTCTTCAACCGGCATGCATCTGCTCTATTAGAATGTTCAGCTTCTGAACTTAAGAAGAAGGTGGGGTCGTCTCGATCTTTTCCAAAAGAGTTAGATCGACCTGTTGGAAAGGAAATTGTCGTAATGGTCAAGGTTAAGGAAAACAACATAAAATATCCTGCCAGTAGTATGGGAGTGTCACAGTTCTCTGTGAAAAAGGATATTTTGGATCAGTTCACATACTCTAATGTCAGCGCTGATGCCAACGCTAATGTCAAGAATTCACCAATCGAGTCATCTTCCTCATACTCATCTCCCAAGATGCTTGGCACTCACAACATTGCGGATGATGATGATGATCTTACAATATCTCAGATAATCACACCTGTGGAGACCTTGTCAAAGAAAAAGAGGAACGGGAAAAATGAATCAGAACAACTTGATGATATAGGCCTCTCCGAAGGGTCCCCTCCAAGCTTCAGCAGCACCAAACCGGCAAAGAAGATCAAGAAGGAGAAATGA 1491 0.3977 MANFDHDLIKDVDDSKDTWCIVARVLRKWIMAKKTPPFDIFKVGMILVDEQGYRVEAFMSQKAQLQRYMDEITEGEVYQFENFVAVPNNDAFKLCHHTWKIRFHSMTFFQKHDLAVPLNAFNFVPIKDIADYNATNYELIDVIGFLQAFGNLVDHKKDSQTIKTLNFTIADHNQIPINVALFGDVAINAFEARTDDLEVPTVVVIRFARISTTKGYGHITNAFHATRVLFNPDLPEVRELIARLGETPGASQNFSQVSSTESQIVTKVTIQKVESEYGWTYDGCPCDKKPVHVDDKLMKCTSCNQEVLKTEPKFKVHYKVFDSTGQCSMLFFNRHASALLECSASELKKKVGSSRSFPKELDRPVGKEIVVMVKVKENNIKYPASSMGVSQFSVKKDILDQFTYSNVSADANANVKNSPIESSSSYSSPKMLGTHNIADDDDDLTISQIITPVETLSKKKRNGKNESEQLDDIGLSEGSPPSFSSTKPAKKIKKEK 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2386g00005 496 Pfam Domain of unknown function DUF223 45 132 IPR003871 -
Pral2386g00005 496 CDD RPA1_DBD_C 264 382 IPR047192 -
Pral2386g00005 496 MobiDBLite consensus disorder prediction 416 432 - -
Pral2386g00005 496 Gene3D - 246 399 IPR012340 -
Pral2386g00005 496 MobiDBLite consensus disorder prediction 457 496 - -
Pral2386g00005 496 CDD RPA1_DBD_B_like 141 244 - -
Pral2386g00005 496 MobiDBLite consensus disorder prediction 416 439 - -
Pral2386g00005 496 MobiDBLite consensus disorder prediction 457 471 - -
Pral2386g00005 496 PANTHER OS03G0429900 PROTEIN 8 460 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral2386g00005 496 CDD RPA1_DBD_A_like 20 107 - -
Pral2386g00005 496 Pfam Replication factor-A C terminal domain 266 379 IPR013955 -
Pral2386g00005 496 SUPERFAMILY Nucleic acid-binding proteins 257 381 IPR012340 -
Pral2386g00005 496 Gene3D - 120 245 IPR012340 -
Pral2386g00005 496 Gene3D - 8 113 IPR012340 -
Pral2386g00005 496 SUPERFAMILY Nucleic acid-binding proteins 121 244 IPR012340 -
Pral2386g00005 496 SUPERFAMILY Nucleic acid-binding proteins 4 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2386g00005 Pral-Chr2386 29842 32384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2386g00005 16 361 Core DNA Replication Machinery Family AT5G08020 23.256 4.30e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2386g00005 - - pcin:129301944 324.709