Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2380g00001 ATGGATTCTCTTATACCATTTCAAGACCTCAATGACTTACCCGACCCATCCGCCTGTATGCCGAGCGGCAGCACCAACCCCATCAATGCCGGTGCTGGTGCGACTACTCCCACCGTTATGTTGGTCCCGAAATTGGAACCGAAGCTCGAGCCGTTGGATGAGCCATGTCTGAACCATCATCCCCAGGAACCCCAAGAAGTGGAGCGGACCATGTTTTCGAATCATGCCTTGGACGGGCTCTCTCCGTCGCAGCGCAGTAATTTCTGTGATAATAACCTCGCCTCCGTTGACAACCGAGGCGCATCGACGGAACAGGACAACCTGTATGCGGAGTTCTATCGATTTTCCGAGCAGTTTAGGACTATGTTGGCTGAGAGGTTTAACGCAAAGGGAGATGCCAATGCTTTAGGTCCGGATTCGCGGGCAATTGTTCCAGTGCCACAGGAAAACCAGGTTCCTCCGGTCGTCGTTACTCCGCGGCGGATCCCGCGAGTGAAGGAGCTGGTGAGGGTCAATGATCTTCGAATTGAAGATGACCGGTATTTCCGCAACATTACTAGAAGGACCAGGATGATTTACGATTCGTTGCGTGTTTTGGCAACGGTGGAGGAGGAGAAGAAATTCGATTTTTCTGGCGCTAAACGTATGCGAGGTGATTTGAGGGCTGCCTCGTTGATGAGGGATCGTGGATTGTGGCTTAATCGTGATAAGCGGATAGTGGGCGCGATCCCAGGGATTTACATTGGCGATTTGTTCTTTTTTAGGATGGAACTCGTCGTGGTTGGGTTGCACGGTCAACCACAAGCTGGAATTGACTATCTTCCTTCTAGCCAGAGCACAAATGGGGAGCCAATAGCTACCAGTGTGATAGTTTCTGGTGGATACGAGGATGACGAAGACGGTGGCGATGTGATAATCTACACGGGTCATGGAGGCCAAGCTAAGAATCATTCAAGGCAAGTTGTTCACCAGAAGTTAGAAGGAGGAAATCGTGCCATGGAAAGAAGCATGCATTATGGAATTGAAGTGCGTGTGATTCGAGGGTTCAAATATGATGGAAGCGTTTCCAGTAAAATTTACGTTTATGATGGCTTGTATAGAATTGTTCAATGCTGGTTTGATGTGGGTAAATCTGGATTTGGGGTTTACAAGTATAAACTTGTTAGAATTGAGGGCCAACCTGAAATGGGTAGTGCTATTCTTAGACTTGCTCAGGCTCTTAGGACTCGTCCTTTGTCTGTCAAGCCAATGGCTTATCTCAGTCTTGATATTTCTAACCAAAAGGAGAAGGTTCCCGTTCGTCTTTTTAACGACATAGATAGGGATCATGAGCCTTTGCGTTATGAATATCTTTCCCGGACTAATTTTCCTCCATTTGTATTTCATCTAACTGGGAATGCTACCGGTTGTGACTGCGTTGATGGGTGTGCTGATAACTGCTTTTGTGCTATGAAAAACGGCGGCCAATTCCCTTATAATCTAAATGGGATTCTTGTGAGAGGGAAGCCTATAATTTTTGAATGTGGCCCTTTCTGTCGTTGTCCTCCACATTGCCGAAATCGGGTTACGCAGCATGGGCCGAAAAATAGATTGGAAGTGTTTCGGTCAAGGGAAACAGGTTGGGGAGTGAGGTCATTGGACCTTATTCATGCGGGTGCTTTTATCTGTGAATATGCAGGGGTTGTTCTGACTATGGAGCAAGCACAGATTTTGTCAATGAATGGAGATTCATTGATATATCCGAGTCGGTTTTCTAATAGGCAAGCCTCAGAATGGGGTGATTTATCTCAAATATACTCTGATTATGTGCGTCCATCTTATCCATCAATTCCACCTTTAGATTTTGCCATGGATGTGTCCACAATGAGGAATCTTGCTTGCTATATGAGCCACAGTTCAATACCTAACGTGTCGGTTCAGTTTGTGCTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCATTGGAGAACATCCCTCCAATGAGGGAGCTCAGCCTTGATTATGGAATTGCACAGGAAACTCGTCTTTGGGAAGAAGGCGCTCAGAGAACAGTTACAATGAGGAAAAAGGAAGGGCTGTCTGATTATCGATATTTTCCAGAACCAGATCTTCCTGCAGTCTTCCTTTCCAAAGAATATGTTGATGATATTCGCAATTCCTTACCTGAGCTTCCAGAAATAAAGCGTAGAAGATATGAGAATATGGGCTTAAGCATGCAAGATGTTCTTTTCCTTGCTAATGATAAAAATATTGCAGAGTTTTTCGATGCTACCCTTGCCAAAGGTGCTGATGTAAAGCTGGCTGCCAATTGGATTATGGGCGATATTGCCGCCTTCATGAAAAATGAAAAGTTGACTATAAATGAAATTAAGCTTACACCTGAAGAGCTGTCCGAGTTGATAGCTTCCATTCAAGGTGGAGTTATCAGTGGCAAGATTGGGAAGGAGATATTATTCGAGCTGCTAGCCAAGGGTGGAACCGTTAAGGGGCTGATAAAAGAAAAGGATTTGGTTCAGATAACAGATCCTGCTGAGATTGAAAAAATGGTGGACCAAGTGCTTGCGGAGAATCCAAAGCAGCTAGAACAACATATCGTGGAGGCAAAACTAAGCTACACAG 2632 0.4529 MDSLIPFQDLNDLPDPSACMPSGSTNPINAGAGATTPTVMLVPKLEPKLEPLDEPCLNHHPQEPQEVERTMFSNHALDGLSPSQRSNFCDNNLASVDNRGASTEQDNLYAEFYRFSEQFRTMLAERFNAKGDANALGPDSRAIVPVPQENQVPPVVVTPRRIPRVKELVRVNDLRIEDDRYFRNITRRTRMIYDSLRVLATVEEEKKFDFSGAKRMRGDLRAASLMRDRGLWLNRDKRIVGAIPGIYIGDLFFFRMELVVVGLHGQPQAGIDYLPSSQSTNGEPIATSVIVSGGYEDDEDGGDVIIYTGHGGQAKNHSRQVVHQKLEGGNRAMERSMHYGIEVRVIRGFKYDGSVSSKIYVYDGLYRIVQCWFDVGKSGFGVYKYKLVRIEGQPEMGSAILRLAQALRTRPLSVKPMAYLSLDISNQKEKVPVRLFNDIDRDHEPLRYEYLSRTNFPPFVFHLTGNATGCDCVDGCADNCFCAMKNGGQFPYNLNGILVRGKPIIFECGPFCRCPPHCRNRVTQHGPKNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQILSMNGDSLIYPSRFSNRQASEWGDLSQIYSDYVRPSYPSIPPLDFAMDVSTMRNLACYMSHSSIPNVSVQFVLYDHNNLMFPHLMLFALENIPPMRELSLDYGIAQETRLWEEGAQRTVTMRKKEGLSDYRYFPEPDLPAVFLSKEYVDDIRNSLPELPEIKRRRYENMGLSMQDVLFLANDKNIAEFFDATLAKGADVKLAANWIMGDIAAFMKNEKLTINEIKLTPEELSELIASIQGGVISGKIGKEILFELLAKGGTVKGLIKEKDLVQITDPAEIEKMVDQVLAENPKQLEQHIVEAKLSYT 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2380g00001 877 Gene3D - 726 780 IPR042114 -
Pral2380g00001 877 SMART gatb_yqey_2 757 874 IPR018027 GO:0016884
Pral2380g00001 877 SUPERFAMILY GatB/YqeY motif 727 830 IPR003789 GO:0016884
Pral2380g00001 877 Pfam GatB domain 757 867 IPR018027 GO:0016884
Pral2380g00001 877 FunFam Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 726 780 - -
Pral2380g00001 877 Pfam SAD/SRA domain 240 393 IPR003105 -
Pral2380g00001 877 MobiDBLite consensus disorder prediction 1 34 - -
Pral2380g00001 877 SMART preset_2 421 513 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral2380g00001 877 Pfam Pre-SET motif 424 521 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral2380g00001 877 SUPERFAMILY SET domain 411 674 IPR046341 -
Pral2380g00001 877 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 91 718 IPR025794 GO:0016571
Pral2380g00001 877 SMART set_7 529 679 IPR001214 GO:0005515
Pral2380g00001 877 ProSiteProfiles PUA domain profile. 332 350 - -
Pral2380g00001 877 Gene3D - 238 397 IPR036987 -
Pral2380g00001 877 MobiDBLite consensus disorder prediction 18 33 - -
Pral2380g00001 877 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 223 405 - -
Pral2380g00001 877 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 165 679 - -
Pral2380g00001 877 ProSiteProfiles Pre-SET domain profile. 468 526 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral2380g00001 877 SUPERFAMILY PUA domain-like 222 400 IPR015947 -
Pral2380g00001 877 ProSiteProfiles YDG domain profile. 241 389 IPR003105 -
Pral2380g00001 877 SUPERFAMILY Glutamine synthetase/guanido kinase 668 726 IPR014746 GO:0003824
Pral2380g00001 877 ProSiteProfiles SET domain profile. 529 673 IPR001214 GO:0005515
Pral2380g00001 877 Gene3D SET domain 398 681 IPR046341 -
Pral2380g00001 877 SMART G9a_1 236 393 IPR003105 -
Pral2380g00001 877 Pfam SET domain 540 673 IPR001214 GO:0005515
Pral2380g00001 877 Pfam GatB/GatE catalytic domain 662 718 IPR006075 GO:0016874
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2380g00001 Pral-Chr2380 418 11852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2380g00001 160 676 Su(var)3-9 homologs AT5G04940 40.038 3.16e-109 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral2380g00001 SAD_SRA 5e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2380g00001 K11420 - qsa:O6P43_003131 933.324