Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral2374g00001 | GCCGGTGTGATGAAGACAGGTGTGGGTAATACAAGAAAGAAGTTTAGTTTACAGATGGTTGCATATCTAACTGGTCTTTTGTTGCTTCATGATAAAGATTGGGAGGGTGAAGAATCAGATGAAGATGATGATAGTGATGATAATCTAGATGTTTCAGATGATGATGATACCTACTATGGAAGAAAACCTACGAGTCGGCAACGTGGCAAAGTGGGACGAACTGTAAAACCTACTAGAGAACGCAAATCATTTGGTGCGTCTGGTCGGCAAAGAAAGCCTAAGACATCTTTTGAAGAGTATGCGTCAACAGCAGAGGATTCTGAAAGTGAAAGTGATGATGATTTCAAAAGCATGAGAAAGAGAGGTGCAAATGCTCGCAAGAATAATGTTCGTTCTTCTGCGGCTGCTAGTTTTTCTGGCCAGAGCAGTGAGGTTCGCACATCTAGTAGGACAGTTAGGAAGAAGGTGTCATATGTTGAAAGTGAAGAAAGTGAAGAAGCAGATGAAGGGAAGAAGAAGAAGTCCCAAAAAGAAGAGCTTGAAGAGGAAGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAGGGCATGGCTGATGAGGCGCGGAGGAATAATAGATCAACAGAACCTGTTTTATGGAGTAATTTGTTTGATTCTGAACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAATGGAAGTCATTTGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTAAATTATATGAAGAAAGTGACGGAGGACATCCGGTACAGGAACACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAATAGCCAGGTGGAAAGAATCATTGCGGATAGAATCAGCAAAGATAATTCTGGCAATGTTATTATAGAATATTTGGTCAAGTGGCAAGGGCTGTCTTATGCTGAAGTGACATGGGAGAAAGACACAGATATTGCTTTTGCTCAGCATGCTATTGATGAGTACAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGAGTGTAGATCTACAACGCAAGAAAAGTAAAGCAAGTTTGAGGAAGCTTGATGAACAGCCTGAGTGGTTGAAGGGGGGAAAGCTTCGTGATTATCAACTTGAGGGCTTGAATTTTCTTGTTAACAGTTGGAGAAATGACACAAATGTTATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTTCAGAATGCCCAGCAAATCCATGGCCCCTTTCTTGTAGTTGTCCCTTTGTCTACTTTGTCAAACTGGGCCAAAGAGTTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTAATCGAGCAGGGCGAGAGGTTTGTCAACTGTATGAATTTCATAATGATAAAAAGGTTGGCAGGCCTATAAAATTTAATGCCCTCTTGACTACATATGAAGTAGTTCTGAAGGATAAAGCTGTTCTCTCCAAGATTAAATGGAATTATTTGATGGTTGATGAGGCTCATAGGCTGAAAAATAGCGAGGCTCAGCTGTACACTACACTTTCAGAATTTAGCACCAAGAACAAATTGCTTATCACTGGCACCCCCCTACAGAACAGTGTTGAAGAGCTGTGGGCCTTGCTTCATTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTTGTTCAATGAGAATGAGCTTGCCAATCTTCATATGGAATTGAAGCCTCACATACTCCGAAGAGTCATAAAAGATGTAGAGAAATCGTTGCCCCCAAAAATTGAGCGTATACTCAGAGTTGAAATGTCTCCTCTTCAAAAACAGTATTACAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTACTTAACATTGTGGTTGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGACCATGGTTACGGGGGGGACTCAGGAAGTAGTGATAGCAGTAAACTCGAGAGAATTGTCTTCAGCAGTGGGAAGCTTGTCATACTTGATAAGCTACTTGTTAGATTGCATGAGACTAAACATCGTGTTCTGATATTCTCTCAGATGGTTAGGATGCTGGACATACTGGCCGAGTACATGTCCCTTAGAGGATTTCAATTCCAGAGGCTTGATGGAAGTACAAAGGCTGAGTTGCGACAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACTAGAGCAGGAGGTCTAGGTATCAATCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCCCAGAATGACCTCCAGGCCATGAGCAGAGCACATAGAATTGGGCAACAAGAAGTTGTCAACATATATAGATTTTTGACCAGCAAAAGTGTCGAGGAAGATATTTTAGAACGGGCTAAGAAAAAGATGGTCCTTGACCACTTGGTCATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAGAAAGGAGGTCTTTTTGACAAAAATGAGCTATCAGCAATTTTGAGATTTGGGGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGTAAAAAGCGACTTTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCCGAGGGAGAGCAAGCGCATGAATTATTGAGTGCCTTTAAGGTTGCTAATTTCTGCAATGATGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGATGCAGTAGCCCAAGCTGAAGAAGCTTTGGCTCCACGTGCTGCAAGGAGCATTAAAAGTTACGCAGAGGCCAATCAATCTGAAAGAAGTAGTAAACGTAAAAAGAAAGAACCTGAGCCTCCTGAGCGAGCTCAGAAACGCCGGAAAGCTGAGTATTCAGCTCCTGCAACGCCAATGATTGAGGGAGCATCAGCCCAAGTGAGATGTTGGTCCTATGGGAGTGTATCTAAAAGAGATGCACTACGATTTTCTCGTGCTGTTATGAAATTTGGGAATGAGAGCCAAATCCACTTAATAGCTGCTGAGGTTGGTGGGGCATTTGCGGCTGCTCCGCCTGAAGCTCAGATTGAACTTTTCAATTCTCTAATTGATGGCTGTAAAGAAGCAGCAGAACAAGGAAGTATAGACCCAAAGGGGCCTCTTTTGGACTTTTTTGGTGTCCCAGTGAAGGCAAATGATCTGCTTAACCGTGTTCAAGAACTCCAACTCTTGGCAAAGCGCATTAGTAGATATGAAGATCCCATTGCACAGTTTCGTGTTTTAACATATCTTAAACCTTCAAACTGGTCTAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATTCATTATCATGGATTTGGTAATTGGGAAAAGATACGATTAGATGAAAGGCTTGGCCTCATGAAGAAGATTGCACCGGTTGAACTTCATCACCATGAAACTTTCTTGCCACGAGCTCCTAATTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAACTCGTTGTTCTTGGTGGTAAAAATGCCAATAGTAAAGGGGGCCGCAAGGCTTCCAAGAAGGAGAGGGAAAATCTTATGAGCATTTCAGTGGCACGTGGGCCAGAGAAGAGAAAATTAAGTTCTTCTAAAGTTAACGCCCAAATGAGAAAGGATAGGTCCCTGAGGTCCCAGAGGATTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCTGACAATGATGAGGTGTATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAGGATGTGATGATTGATGAAATGAAAACCTTGAAACGTCTGCACAGGTTGCAGACAACCAGTGCCAACCTCCCAAAGGAAAAGGTGCTTTCCAAAATCCGCAATTACTTGCAGCTTCTTGGGCTGAGAATAGATCAAATTGTGTTAGAACATGAACAGGAGCCTTATAAGCAAGATAGGATGACAACGCGACTGTGGAACTATGTCTCCACCTTCTCCCATCTTTCAGGGGAGAGGCTGTATCAGATCTATTCCAAACTTAAACAGGAGCAACAAGAGGAGGCTGGGGTTGGCCCTTCTCACATCAATGGGTCAGTATCTGGTCCATTTGGGAGAAATCACCCTAATTCATTCCCTCGTCATATGGAGAGACAAAGAGGATACAAAAATGTGACTTCCTATCAAATGCCAGAACCAGTTCACAATACAGGAAAATCTGAGGCTTGGAAACGAAGGAGGAGAGGAGAAGGCGACAGTCATTTTCAAGGTCAGCCACCATCTCAGAGAGCTATGGGTAATGGAATCCAAATATCTGACCCTAACTCACTGGGGATTCTTGGGGCTGGACCCTCTGATAGACGTTTTGTTAGTGAGAAACCATATAGGACACGACCTGGTGGGGTTCCTCCAAGACAGGGTTTCTCCTCAGGCATAAAATAG | 4578 | 0.4214 | AGVMKTGVGNTRKKFSLQMVAYLTGLLLLHDKDWEGEESDEDDDSDDNLDVSDDDDTYYGRKPTSRQRGKVGRTVKPTRERKSFGASGRQRKPKTSFEEYASTAEDSESESDDDFKSMRKRGANARKNNVRSSAAASFSGQSSEVRTSSRTVRKKVSYVESEESEEADEGKKKKSQKEELEEEDGDSIEKVLWHQPKGMADEARRNNRSTEPVLWSNLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYMKKVTEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIIEYLVKWQGLSYAEVTWEKDTDIAFAQHAIDEYKAREAAMSVQGKSVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQLYEFHNDKKVGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSLFNENELANLHMELKPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFLTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEQAHELLSAFKVANFCNDEDDGSFWSRWIKPDAVAQAEEALAPRAARSIKSYAEANQSERSSKRKKKEPEPPERAQKRRKAEYSAPATPMIEGASAQVRCWSYGSVSKRDALRFSRAVMKFGNESQIHLIAAEVGGAFAAAPPEAQIELFNSLIDGCKEAAEQGSIDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELVVLGGKNANSKGGRKASKKERENLMSISVARGPEKRKLSSSKVNAQMRKDRSLRSQRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGLRIDQIVLEHEQEPYKQDRMTTRLWNYVSTFSHLSGERLYQIYSKLKQEQQEEAGVGPSHINGSVSGPFGRNHPNSFPRHMERQRGYKNVTSYQMPEPVHNTGKSEAWKRRRRGEGDSHFQGQPPSQRAMGNGIQISDPNSLGILGAGPSDRRFVSEKPYRTRPGGVPPRQGFSSGIK | 1525 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral2374g00001 | 1525 | CDD | SF2_C_SNF | 698 | 832 | - | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 148 | 190 | - | - | |
| Pral2374g00001 | 1525 | Gene3D | - | 171 | 298 | - | - | |
| Pral2374g00001 | 1525 | Gene3D | - | 622 | 852 | IPR027417 | - | |
| Pral2374g00001 | 1525 | Gene3D | - | 1117 | 1222 | - | - | |
| Pral2374g00001 | 1525 | SMART | DUF4208_2 | 1288 | 1393 | IPR025260 | - | |
| Pral2374g00001 | 1525 | FunFam | Chromodomain-helicase-DNA-binding protein 2 isoform 1 | 622 | 852 | - | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 73 | 101 | - | - | |
| Pral2374g00001 | 1525 | Gene3D | - | 382 | 621 | IPR038718 | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 985 | 1009 | - | - | |
| Pral2374g00001 | 1525 | Coils | Coil | 851 | 871 | - | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 1467 | 1486 | - | - | |
| Pral2374g00001 | 1525 | Pfam | SNF2-related domain | 410 | 679 | IPR000330 | GO:0005524|GO:0140658 | |
| Pral2374g00001 | 1525 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 300 | 354 | IPR023780 | - | |
| Pral2374g00001 | 1525 | SUPERFAMILY | Chromo domain-like | 278 | 354 | IPR016197 | - | |
| Pral2374g00001 | 1525 | CDD | CD2_tandem | 297 | 353 | - | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 980 | 1014 | - | - | |
| Pral2374g00001 | 1525 | Coils | Coil | 904 | 931 | - | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 35 | 53 | - | - | |
| Pral2374g00001 | 1525 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 403 | 575 | IPR014001 | - | |
| Pral2374g00001 | 1525 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 378 | 612 | IPR027417 | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 1450 | 1465 | - | - | |
| Pral2374g00001 | 1525 | SMART | ultradead3 | 387 | 586 | IPR014001 | - | |
| Pral2374g00001 | 1525 | Pfam | Domain of unknown function (DUF4208) | 1300 | 1392 | IPR025260 | - | |
| Pral2374g00001 | 1525 | CDD | CD1_tandem | 184 | 264 | - | - | |
| Pral2374g00001 | 1525 | FunFam | Chromo domain-containing protein 1 | 174 | 299 | - | - | |
| Pral2374g00001 | 1525 | SUPERFAMILY | Chromo domain-like | 183 | 266 | IPR016197 | - | |
| Pral2374g00001 | 1525 | Pfam | Helicase conserved C-terminal domain | 708 | 821 | IPR001650 | - | |
| Pral2374g00001 | 1525 | FunFam | Photoperiod-independent early flowering 1 | 361 | 635 | - | - | |
| Pral2374g00001 | 1525 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 299 | 363 | IPR000953 | - | |
| Pral2374g00001 | 1525 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 711 | 862 | IPR001650 | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 127 | 147 | - | - | |
| Pral2374g00001 | 1525 | Coils | Coil | 163 | 183 | - | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 35 | 190 | - | - | |
| Pral2374g00001 | 1525 | SMART | chromo_7 | 184 | 267 | IPR000953 | - | |
| Pral2374g00001 | 1525 | SMART | chromo_7 | 297 | 356 | IPR000953 | - | |
| Pral2374g00001 | 1525 | SMART | helicmild6 | 737 | 821 | IPR001650 | - | |
| Pral2374g00001 | 1525 | MobiDBLite | consensus disorder prediction | 1441 | 1525 | - | - | |
| Pral2374g00001 | 1525 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 186 | 265 | IPR000953 | - | |
| Pral2374g00001 | 1525 | FunFam | protein CHROMATIN REMODELING 5 isoform X2 | 301 | 353 | - | - | |
| Pral2374g00001 | 1525 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 615 | 895 | IPR027417 | - | |
| Pral2374g00001 | 1525 | Gene3D | - | 301 | 353 | - | - | |
| Pral2374g00001 | 1525 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 76 | 1413 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral2374g00001 | Pral-Chr2374 | 64 | 16453 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral2374g00001 | 413 | 848 | RAD5 or RAD16-like Gene Family | AT1G02670 | 26.969 | 3.05e-35 | 142 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SNF2 | Pral2374g00001 | SNF2_N | 1.8e-64 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral2374g00001 | K11367 | - | gmx:100808039 | 2422.89 |