Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2370g00004 ATGGAAACAGCTTCCAGAAGAAGAAGCAACTTGGGTGCCCTTATGCCAATTACAGCAGCAACACCCCACTGTTCCATTGACAAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAGGATGCATATGTCGGTGATGAGGCACAATCTAAGAGGGGTATTCTTACTCTCAAGTACCCAATTGAGCATGGAATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCAGTGCTTTTAACTGAGGCTCCACTTAATCCCAAGGCTAATCGTGAGAAGATGACTCAAATTATGTTTGAGACTTTCAACACCCCTGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTGTATGCTAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGACGGTGTCAGTCACACAGTTCCTATCTATGAGGGTTATGCTCTCCCTCATGCCATCCTTCGTCTTGACCTGGCTGGTCGCGACCTTACTGAATACATGATGAAAATTCTGACTGAACGTGGGTATTCTTTTACCACCTCAGCAGAGCGGGAAATTGTTAGAGATGTGAAGGAAAAGCTAGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACAGCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGTCAGGTCATCACTATTGGTGCTGAACGTTTCAGATGTCCGGAGGTTTTGTACCAGCCATCTTTGATTGGAATGGAAGCCGCAGGCATTCATGAGACAACATACAACTCCATTATGAAGTGTGATGTTGATATTAGGAAAGACTTGTATGGTAACATTGTCCTCTCCGGGGGTTCAACCATGTTCCCAGGCATTGCTGATAGAATGAGCAAGGAGATCTCTGCATTGGCCCCAAGTAGTATGAAGATCAAGGTAGTTGCACCACCTGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCGATTTTGGCATCCCTGAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGACCATCCATTGTGCACAGAAAATGCTTCTAA 1158 0.4646 METASRRRSNLGALMPITAATPHCSIDKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYMMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2370g00004 385 PRINTS Actin signature 71 93 IPR004000 -
Pral2370g00004 385 PRINTS Actin signature 59 70 IPR004000 -
Pral2370g00004 385 PRINTS Actin signature 36 45 IPR004000 -
Pral2370g00004 385 PRINTS Actin signature 150 169 IPR004000 -
Pral2370g00004 385 PRINTS Actin signature 125 138 IPR004000 -
Pral2370g00004 385 PRINTS Actin signature 246 262 IPR004000 -
Pral2370g00004 385 Gene3D Actin; Chain A, domain 4 190 281 - -
Pral2370g00004 385 PANTHER ACTIN 29 378 IPR004000 -
Pral2370g00004 385 FunFam Actin, alpha skeletal muscle 17 174 - -
Pral2370g00004 385 ProSitePatterns Actins and actin-related proteins signature. 114 126 IPR020902 -
Pral2370g00004 385 Gene3D - 148 348 - -
Pral2370g00004 385 ProSitePatterns Actins signature 1. 63 73 IPR004001 -
Pral2370g00004 385 SUPERFAMILY Actin-like ATPase domain 28 163 IPR043129 -
Pral2370g00004 385 FunFam Actin, muscle 190 281 - -
Pral2370g00004 385 SUPERFAMILY Actin-like ATPase domain 157 385 IPR043129 -
Pral2370g00004 385 CDD NBD_sugar-kinase_HSP70_actin 84 191 - -
Pral2370g00004 385 SMART actin_3 21 385 IPR004000 -
Pral2370g00004 385 FunFam Actin, alpha skeletal muscle 265 338 - -
Pral2370g00004 385 Gene3D - 28 379 - -
Pral2370g00004 385 FunFam Actin, alpha skeletal muscle 339 385 - -
Pral2370g00004 385 ProSitePatterns Actins signature 2. 366 374 IPR004001 -
Pral2370g00004 385 Pfam Actin 28 385 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2370g00004 Pral-Chr2370 18757 30175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2370g00004 28 385 Cytoskeleton Gene Families AT3G12110 97.207 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2370g00004 K10355 - oeu:111397366 708.753